Search references through taxonomy

You may search references here using RCC strains taxonomy. For example, you may search papers involving all Emiliania RCC strains. Note that results depend on references keywords (RCC tags) which will be updated progressively.

Reference
Yang M, Batchelor-McAuley C, Barton S, Rickaby REM, Bouman HA, Compton RG.  2021.  Opto-Electrochemical Dissolution Reveals Coccolith Calcium Carbonate Content. Angewandte Chemie International Edition. 60:20999–21006.
Azizah M, Pohnert G.  2022.  Orchestrated Response of Intracellular Zwitterionic Metabolites in Stress Adaptation of the Halophilic Heterotrophic Bacterium Pelagibaca bermudensis. Marine Drugs. 20:727.
Blanc-Mathieu R, Sanchez-Ferandin S, Eyre-Walker A, Piganeau G.  2013.  Organellar inheritance in the green lineage: Insights from ostreococcus tauri. Genome Biology and Evolution. 5:1503–1511.
Henríquez-Castillo C, Botebol H, Mouton A, Ramírez-Flandes S, Lozano J-C, Lelandais G, Andrade S, Trefault N, de la Iglesia R, Bouget F-Y.  2018.  Ostreococcus tauri luminescent reporter lines as biosensors for detecting pollution from copper-mine tailing effluents in coastal environments. Frontiers in Environmental Science. 6:1–11.
Rokitta SD, von Dassow P, Rost B, John U.  2016.  P- and n-depletion trigger similar cellular responses to promote senescence in eukaryotic phytoplankton. Frontiers in Marine Science. 3
Moldovan MA, Gelfand MS.  2018.  Pangenomic definition of prokaryotic species and the phylogenetic structure of prochlorococcus spp.. Frontiers in Microbiology. 9:1–11.
Amiraux R, Jeanthon C, Vaultier F, Rontani J-F.  2016.  Paradoxical effects of temperature and solar irradiance on the photodegradation state of killed phytoplankton. Journal of Phycology. 52:475–485.
Calmes B, Strittmatter M, Jacquemin B, Perrineau MMathilde, Rousseau C, Badis Y, J. Cock M, Destombe C, Valero M, Gachon CMM.  2020.  Parallelisable non-invasive biomass, fitness and growth measurement of macroalgae and other protists with nephelometry. Algal Research. 46:101762.
Stüken A, Riobó P, Franco J, Jakobsen KS, Guillou L, Figueroa RI.  2015.  Paralytic shellfish toxin content is related to genomic sxtA4 copy number in Alexandrium minutum strains. Frontiers in Microbiology. 6:1–10.
Ishida K-ichiro, Endo H, Koike S.  2011.  Partenskyella glossopodia (Chlorarachniophyceae) possesses a nucleomorph genome of approximately 1 Mbp. Phycological Research. 59:120–122.
Ota S, Vaulot D, Le Gall F, Yabuki A, Ishida K.  2009.  Partenskyella glossopodia gen. et sp. nov., the first report of chlorarachniophyte that lacks pyrenoid. Protist. 160:137–150.
Gafar N.A, Eyre B.D, Schulz K.G.  2019.  Particulate inorganic to organic carbon production as a predictor for coccolithophorid sensitivity to ongoing ocean acidification. Limnology and Oceanography Letters. 4:62–70.
Lepelletier F, Karpov SA, Le Panse S, Bigeard E, Skovgaard A, Jeanthon C, Guillou L.  2014.  Parvilucifera rostrata sp. nov., a novel parasite in the phylum Perkinsozoa that infects the toxic dinoflagellate Alexandrium minutum (Dinophyceae). Protist. 165:31–49.
Kettler G, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J et al..  2007.  Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS genetics. 3:e231.
Siano R, Montresor M, Probert I, Not F, de Vargas C.  2010.  Pelagodinium gen. nov. and P. beii comb. nov., a dinoflagellate symbiont of planktonic foraminifera. Protist. 161:385–399.
Fountain SJ, Cao LS, Young MT, North RA.  2008.  Permeation properties of a P2X receptor in the green algae Ostreococcus tauri. Journal of Biological Chemistry. 283:15122–15126.
Bramucci AR, Case RJ.  2019.  Phaeobacter inhibens induces apoptosis-like programmed cell death in calcifying Emiliania huxleyi. Scientific Reports. 9:1–12.
Andersen RA, J. Bailey C, Decelle J, Probert I.  2015.  Phaeocystis rex sp. nov. (Phaeocystales, Prymnesiophyceae): a new solitary species that produces a multilayered scale cell covering. European Journal of Phycology. 50:207–222.
Vaulot D, Birrien J.-L., Marie D, Casotti R, Veldhuis MJW, Kraay GW, Chrétiennot-Dinet M.-J..  1994.  Phaeocystis spp.: morphology, ploidy, pigment composition and genome size of cultured strains. Journal of Phycology. 30:1022–1035.
Mizrachi A, Graff S, Creveld V, Shapiro OH, Rosenwasser S.  2018.  Phenotypic variability in chloroplast redox state predicts cell fate in a marine diatom. bioRxiv.
Blanco-Ameijeiras S, Lebrato M, Stoll HM, Iglesias-Rodriguez D, Müller MN, Méndez-Vicente A, Oschlies A.  2016.  Phenotypic variability in the coccolithophore emiliania huxleyi.. PloS one. 11:e0157697.
Monier A, Welsh RM, Gentemann C, Weinstock G, Sodergren E, E Armbrust V, Eisen JA, Worden AZ.  2012.  Phosphate transporters in marine phytoplankton and their viruses: cross-domain commonalities in viral-host gene exchanges. Environmental Microbiology. 14:162–176.
Gerecht A.C., Šupraha L., Edvardsen B., Langer G., Henderiks J..  2015.  Phosphorus availability modifies carbon production in Coccolithus pelagicus (Haptophyta). Journal of Experimental Marine Biology and Ecology. 472:24–31.
Partensky F, Hoepffner N, Li WKW, Ulloa O, Vaulot D.  1993.  Photoacclimation of Prochlorococcus sp. (Prochlorophyta) strains isolated from the North Atlantic and the Mediterranean Sea. Plant Physiology. 101:295–296.
Lacour T, Larivière J, Ferland J, Morin P-I, Grondin P-L, Donaher N, Cockshutt A, Campbell DA, Babin M.  2022.  Photoacclimation of the polar diatom Chaetoceros neogracilis at low temperature. PLOS ONE. 17:e0272822.
Soitamo A, Havurinne V, Tyystjärvi E.  2017.  Photoinhibition in marine picocyanobacteria. Physiologia Plantarum. 161:97–108.
Dimier C, Corato F, Saviello G, Brunet C.  2007.  Photophysiological properties of the marine picoeukaryote Picochlorum RCC 237 (Trebouxiophyceae, Chlorophyta). Journal of Phycology. 43:275–283.
Santos ALopes dos, Gourvil P, Rodriguez-Hernandez F, Garrido JLuis, Vaulot D.  2016.  Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII. Journal of Phycology. 52:148–155.
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.
Six C, Sherrard R, Lionard M, Roy S, Campbell DA.  2009.  Photosystem II and pigment dynamics among ecotypes of the green alga Ostreococcus. Plant Physiology. 151:379–390.
Shukla A, Biswas A, Blot N, Partensky F, Karty JA, Hammad LA, Garczarek L, Gutu A, Schluchter WM, Kehoe DM.  2013.  Phycoerythrin-specific bilin lyase–isomerase controls blue-green chromatic acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences of the United States of America. 109:20136–20141.
Liu F, Gledhill M, Tan Q-G, Zhu K, Zhang Q, Salaün P, Tagliabue A, Zhang Y, Weiss D, Achterberg EP et al..  2022.  Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. The ISME Journal. 16:2329–2336.
Fawley MW, Yun Y, Qin M.  2000.  Phylogenetic analyses of 18S rDNA sequences reveal a new coccoid lineage of the Prasinophyceae (Chlorophyta). Journal of Phycology. 36:387–393.
Courties C, Perasso R, Chrétiennot-Dinet M.-J., Gouy M, Guillou L, Troussellier M.  1998.  Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta, Prasinophyceae). Journal of Phycology. 34:844–849.
Henley WJ, Hironaka JL, Guillou L, Buchheim MA, Buchheim JA, Fawley MW, Fawley KP.  2004.  Phylogenetic analysis of the Nannochloris-like' algae and diagnoses of Picochlorum oklahomensis gen. et sp nov (Trebouxiophyceae, Chlorophyta). Phycologia. 43:641–652.
Rodriguez F, Feist SW, Guillou L, Harkestad LS, Bateman K, Renault T, Mortensen S.  2008.  Phylogenetic and morphological characterization of the green algae infesting blue mussel Mytilus edulis in the North and South Atlantic. Diseases of Aquatic Organisms. 81:231–240.
Tragin M, Santos ALopes dos, Christen R., Vaulot D..  2016.  Phylogenetic diversity and ecology of green micro algae in marine systems. Perspectives in Phycology. in press
Cho A, Tikhonenkov DV, Lax G, Prokina KI, Keeling PJ.  2023.  Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean. Molecular Phylogenetics and Evolution. :107964.
Parks M, Nakov T, Ruck E, Wickett NJ, Alverson AJ, Rice AL, Conservation P, Botanic C, Glencoe G.  2017.  Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta). American Journal of Botany. 105:1–18.
Mackey KRM, Post AF, McIlvin MR, Saito MA.  2017.  Physiological and proteomic characterization of light adaptations in marine Synechococcus. Environmental Microbiology. 19:2348–2365.
Marie D, Simon N, Vaulot D.  2005.  Phytoplankton cell counting by flow cytometry. Algal culturing techniques. :253–267.
Treusch AH, Demir-Hilton E, Vergin KL, Worden AZ, Carlson CA, Donatz MG, Burton RM, Giovannoni SJ.  2012.  Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. The ISME journal. 6:481–492.
Gebser B, Thume K, Steinke M, Pohnert G.  2020.  Phytoplankton-derived zwitterionic gonyol and dimethylsulfonioacetate interfere with microbial dimethylsulfoniopropionate sulfur cycling. MicrobiologyOpen. :e1014.
Decelle J, Romac S, Stern RF, Bendif EMahdi, Zingone A, Audic S, Guiry MD, Guillou L, Tessier D, Le Gall F et al..  2015.  PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy. Molecular Ecology Resources. 15:1435–1445.
Vandepoele K, Van Bel M, Richard G, Van Landeghem S, Verhelst B, Moreau H, Van de Peer Y, Grimsley N, Piganeau G.  2013.  pico-PLAZA, a genome database of microbial photosynthetic eukaryotes. Environmental Microbiology. 15:2147–2153.
Worden AZ.  2006.  Picoeukaryote diversity in coastal waters of the Pacific Ocean. Aquatic Microbial Ecology. 43:165–175.
Demory D, Baudoux A-claire, Monier A, Simon N, Six C, Ge P, Rigaut-jalabert F, Marie D, Sciandra A, Bernard O et al..  2019.  Picoeukaryotes of the Micromonas genus: sentinels of a warming ocean. The ISME Journal. 13:132–146.
Le Gall F, Rigaut-Jalabert F, Marie D, Garczareck L, Viprey M, Godet A, Vaulot D.  2008.  Picoplankton diversity in the south-east pacific ocean from cultures. Biogeosciences. 5:203–214.
Latasa M, Scharek R, Le Gall F, Guillou L, Le Gall F.  2004.  Pigment suites and taxonomic groups in Prasinophyceae. Journal of Phycology. 40:1149–1155.
Garrido JL, Brunet C, Rodríguez F.  2016.  Pigment variations in Emiliania huxleyi (CCMP370) as a response to changes in light intensity or quality. Environmental Microbiology. 18:4412–4425.
Jouenne F, Probert I, Vaulot D.  2008.  Plankton taxonomy in the computer age. Cahiers de Biologie Marine. 49:355–367.
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.
Klinger CM, Paoli L, Newby RJ, Wang MYu-Wei, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, A Cahoon B et al..  2018.  Plastid transcript editing across dinoflagellate lineages shows lineage-specific application but conserved trends. Genome Biology and Evolution. 10:1019–1038.
Devic M, Mariac C, Vergé V, Schatt P, Dennu L, Lozano J-C, Bouget F-Y, Sabot F.  2023.  Population dynamics of the cosmopolitan eukaryotic picophytoplankton Bathycoccus during seasonal blooms in the bay of Banyuls sur Mer (North Western Mediterranean sea).
Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C et al..  2017.  Population genomics of picophytoplankton unveils novel chromosome hypervariability. Science Advances. 3:e1700239.
Avilan L, Lebrun R, Puppo C, Citerne S, Cuiné S, Li-Beisson Y, Menand B, Field B, Gontero B.  2020.  ppGpp influences protein protection, growth and photosynthesis in Phaeodactylum tricornutum. bioRxiv. :2020.03.05.978130.

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