RCC2339

Chloroparvula_japonica

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IDENTITY

Chloroparvula_japonica

Domain: 
Eukaryota
Division: 
Chlorophyta
Class: 
Chloropicophyceae
Order: 
Chloropicales
Family: 
Chloropicaceae
Genus: 
Chloroparvula
Genus synonym: 
Clade_VIIB
Remark: 
Clade_VIIB; Not in WORMS
Strain name: 
JST MH340
Strain name synonyms: 
MH340, NIES-2758, CCMP3360
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
2.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling site: 
Iki Island
Sampling country: 
Japan
Sampling ecosystem: 
coastal
Sampling depth (m): 
0
Sampling date: 
Monday, June 29, 2009
Isolation by: 
Noel M-H.
Isolation method: 
Single cell isolation from cryopreserved sample (5%DMSO)
CULTURE CONDITIONS
RCC medium: 
L1
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
40
Remark: 
Transcriptome sequence is planned in project of Moore Foundation (2013).
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Thursday, November 25, 2010
Identification by: 
M. Kawachi
Sampling by: 
Kawachi M.
Isolation growth temperature: 
22.00
Isolation medium: 
MNK
Isolation light: 
40
Deposit to RCC date: 
Friday, November 12, 2010
Deposit to rcc by: 
M. Kawachi

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genome link Genbank organism Genbank taxonomy Description
Transcriptome Link MMETSP1310
LN735350 16S rRNA plastid Prasinophyceae sp. RCC2339 (clade 7X-B2) Eukaryota; Viridiplantae; Chlorophyta; prasinophytes Prasinophyceae sp. RCC2339 (clade 7X-B2) chloroplast partial 16S rRNA gene, strain RCC 2339
KF422628 18S rRNA nucleus Prasinophyceae sp. RCC2339 (clade VIIB) Eukaryota; Viridiplantae; Chlorophyta; Prasinophyceae Prasinophyceae sp. RCC2339 (clade VIIB) 18S ribosomal RNA gene, partial sequence
MF077482 ITS rRNA nucleus prasinophyte sp. RCC2339 Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; prasinophyte clade VII; unclassified prasinophyte clade VII Prasinophyte sp. RCC2339 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence
MK085993 Genome plastid Chloroparvula japonica Eukaryota; Viridiplantae; Chlorophyta; Chloropicophyceae; Chloropicales; Chloropicaceae; Chloroparvula Chloroparvula japonica culture RCC:2339 chloroplast, complete genome
MK086007 Genome mitochondrion Chloroparvula japonica Eukaryota; Viridiplantae; Chlorophyta; Chloropicophyceae; Chloropicales; Chloropicaceae; Chloroparvula Chloroparvula japonica culture RCC:2339 mitochondrion, complete genome

Associated references

Displaying 1 - 4 of 4
Santos ALopes dos, Gourvil P, Tragin M, Noël M-H, Decelle J, Romac S, Vaulot D.  2017.  Diversity and oceanic distribution of prasinophytes clade VII, the dominant group of green algae in oceanic waters. The ISME Journal. 11:512–528. PDF icon Download pdf (2.6 MB)
Turmel M, Santos ALopes dos, Otis C, Sergerie R, Lemieux C.  2019.  Tracing the evolution of the plastome and mitogenome in the chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biology and Evolution. in press
Santos ALopes dos, Gourvil P, Rodriguez-Hernandez F, Garrido JLuis, Vaulot D.  2016.  Photosynthetic pigments of oceanic Chlorophyta belonging to prasinophytes clade VII. Journal of Phycology. 52:148–155. PDF icon Download pdf (979.53 KB)
Santos ALopes dos, Pollina T, Gourvil P, Corre E, Marie D, Garrido JLuis, Rodríguez F, Noël M-H, Vaulot D, Eikrem W.  2017.  Chloropicophyceae, a new class of picophytoplanktonic prasinophytes. Scientific Reports. 7:14019. PDF icon Download pdf (4.58 MB)