RCC2369

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIh
Strain name: 
PROSOPE_1-9 Clonal
Strain name synonyms: 
PROSOPE_1-9, PROS-U-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling site: 
Moroccan upwelling
Sampling country: 
Morocco
Sampling ecosystem: 
pelagic
Sampling cruise: 
PROSOPE
Sampling station: 
UPW
Sampling depth (m): 
5
Sampling date: 
Sunday, September 12, 1999
Isolation by: 
Garczarek L.
Isolation method: 
Filtration < 3 µm
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dB
Remark: 
Genome will be sequenced by Genoscope in 2011
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC394
Sampling CTD: 
0
Sampling bottle: 
0
Sampling by: 
Garczarek L.
Isolation preculture number: 
1
Isolation medium: 
K/10
Isolation light: 
100
Deposit to RCC date: 
Friday, December 3, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Wednesday, December 1, 2010
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KT955730 mpeA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854170 rpsO Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854712 rpsE Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855208 rpsP Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S16 (rpsP) gene, complete cds
KT955720 mpeB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854171 rpsQ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854743 rplF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855239 rpsR Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854156 rplQ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854172 rpsS Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854774 rpsH Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855270 rpsB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854157 rplR Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY854173 rpsU Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854805 rplE Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855301 rpsT Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854158 rplT Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854340 rplO Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854836 rplX Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855332 rpmA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854159 rplV Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854371 rpsF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854867 rplN Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855363 ycf65 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854160 rpmB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854402 rplI Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854898 rplP Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860812 desC3 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854161 rpmE Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854433 rplK Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854929 rpsC Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860840 desA3 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854162 rmpF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854464 rplA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854960 rplB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860859 desA2 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854163 rmpG Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854495 rplJ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854991 rplW Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L23 (rplW) gene, complete cds
MG014402 apcA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY854164 rpmH Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854526 rplL Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855022 rplD Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014433 ApcB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin beta chain (apcB) gene, complete cds
KF177895 CA4-B Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 CA4-B island genomic sequence
KY854165 rpmI Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854557 rpsJ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855053 rplC Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014464 apcD Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF528779 cpeB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854166 rmpJ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854588 rpsG Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855084 rpsA1 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014495 apcF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF177896 cpeY Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854167 rpsK Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854619 rpsI Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855115 rplS Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014568 mpeB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF177897 mpeY Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY854168 rpsL Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854650 rplM Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855146 rpsA2 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
CP047951 Genome Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. PROS-U-1 chromosome, complete genome
KF528817 rpcB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854169 rpsN Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854681 rpsM Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855177 rpsD Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S4 (rpsD) gene, complete cds

Associated references

Displaying 1 - 4 of 4
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22. PDF icon Download pdf (1.87 MB)
Dufour L, Garczarek L, Gouriou B, Clairet J, Ratin M, Partensky F.  2024.  Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology. 15:1349322. PDF icon Download pdf (2.03 MB)