RCC2369

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIh
Strain name: 
PROSOPE_1-9 Clonal
Strain name synonyms: 
PROSOPE_1-9, PROS-U-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling site: 
Moroccan upwelling
Sampling country: 
Morocco
Sampling ecosystem: 
pelagic
Sampling cruise: 
PROSOPE
Sampling station: 
UPW
Sampling depth (m): 
5
Sampling date: 
Sunday, September 12, 1999
Isolation by: 
Garczarek L.
Isolation method: 
Filtration < 3 µm
CULTURE CONDITIONS
RCC medium: 
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dB
Remark: 
Genome will be sequenced by Genoscope in 2011
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC394
Sampling CTD: 
0
Sampling bottle: 
0
Sampling by: 
Garczarek L.
Isolation preculture number: 
1
Isolation medium: 
K/10
Isolation light: 
100
Deposit to RCC date: 
Friday, December 3, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Wednesday, December 1, 2010
Purification by: 
Florian Humily
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854162 rmpF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854464 rplA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854960 rplB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860859 desA2 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854163 rmpG Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854495 rplJ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854991 rplW Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L23 (rplW) gene, complete cds
MG014402 apcA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY854164 rpmH Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854526 rplL Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855022 rplD Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014433 ApcB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin beta chain (apcB) gene, complete cds
KF177895 CA4-B Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 CA4-B island genomic sequence
KY854165 rpmI Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854557 rpsJ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855053 rplC Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014464 apcD Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF528779 cpeB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854166 rmpJ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854588 rpsG Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855084 rpsA1 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014495 apcF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF177896 cpeY Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854167 rpsK Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854619 rpsI Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855115 rplS Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014568 mpeB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF177897 mpeY Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY854168 rpsL Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854650 rplM Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855146 rpsA2 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
CP047951 Genome Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. PROS-U-1 chromosome, complete genome
KF528817 rpcB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854169 rpsN Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854681 rpsM Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855177 rpsD Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S4 (rpsD) gene, complete cds
KT955730 mpeA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class II alpha chain (mpeA) gene, complete cds
KY854170 rpsO Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854712 rpsE Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855208 rpsP Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S16 (rpsP) gene, complete cds
KT955720 mpeB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. PROS-U-1 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854171 rpsQ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854743 rplF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855239 rpsR Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854156 rplQ Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854172 rpsS Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854774 rpsH Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855270 rpsB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854157 rplR Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY854173 rpsU Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854805 rplE Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855301 rpsT Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854158 rplT Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854340 rplO Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854836 rplX Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855332 rpmA Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854159 rplV Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854371 rpsF Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854867 rplN Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855363 ycf65 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854160 rpmB Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854402 rplI Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854898 rplP Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860812 desC3 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854161 rpmE Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854433 rplK Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854929 rpsC Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860840 desA3 Synechococcus sp. PROS-U-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-U-1 delta-12 fatty acid desaturase (desA3) gene, complete cds