RCC2385

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Ib
Strain name: 
MICROVIR 10CR_4-3 Clonal
Strain name synonyms: 
MVIR-18-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling regional sea: 
North Sea
Sampling country: 
Norway
Sampling ecosystem: 
pelagic
Sampling cruise: 
MICROVIR
Sampling station: 
18
Sampling depth (m): 
25
Sampling date: 
Monday, July 23, 2007
Isolation by: 
Foulon E. / Masquelier S.
Isolation method: 
Filtration < 1,2µm + Serial dilution
CULTURE CONDITIONS
RCC medium: 
RCC temperature: 
13.00
RCC transfer period weeks: 
4.00
RCC light: 
35
Phenotype pigment: 
Syn type 3aA
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Tuesday, December 7, 2010
Mother strain: 
RCC1682
Sampling CTD: 
37
Sampling by: 
Foulon E. / Masquelier S.
Isolation medium: 
JM/100
Deposit to RCC date: 
Tuesday, December 7, 2010
Deposit to rcc by: 
F. Humily
Purification date: 
Tuesday, December 7, 2010
Purification by: 
Christophe Six
Purification method: 
One colony on plate

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854091 rmpG Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854491 rplJ Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854987 rplW Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L23 (rplW) gene, complete cds
MG014406 apcA Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY854092 rpmH Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854522 rplL Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855018 rplD Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014437 ApcB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 allophycocyanin beta chain (apcB) gene, complete cds
KY854093 rpmI Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854553 rpsJ Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855049 rplC Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014468 apcD Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF177892 CA4-A Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MVIR-18-1 CA4-A island genomic sequence
KY854094 rmpJ Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854584 rpsG Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855080 rpsA1 Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014499 apcF Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF528764 cpeB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MVIR-18-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854095 rpsK Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854615 rpsI Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855111 rplS Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L19 (rplS) gene, complete cds
CP047942 Genome Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. MVIR-18-1 chromosome, complete genome
KF443072 petB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MVIR-18-1 cytochrome b6 (petB) gene, partial cds
KY854096 rpsL Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854646 rplM Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855142 rpsA2 Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
KF177893 cpeY Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MVIR-18-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854097 rpsN Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854677 rpsM Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855173 rpsD Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S4 (rpsD) gene, complete cds
KF177894 mpeY Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MVIR-18-1 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY854098 rpsO Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854708 rpsE Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855204 rpsP Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S16 (rpsP) gene, complete cds
KF528802 rpcB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. MVIR-18-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854099 rpsQ Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854739 rplF Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855235 rpsR Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY854084 rplQ Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854100 rpsS Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854770 rpsH Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855266 rpsB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854085 rplR Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY854101 rpsU Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854801 rplE Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855297 rpsT Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854086 rplT Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854336 rplO Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854832 rplX Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855328 rpmA Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854087 rplV Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854367 rpsF Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854863 rplN Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855359 ycf65 Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854088 rpmB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854398 rplI Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854894 rplP Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860808 desC3 Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854089 rpmE Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854429 rplK Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854925 rpsC Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860836 desA3 Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854090 rmpF Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854460 rplA Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854956 rplB Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860873 desC4 Synechococcus sp. MVIR-18-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. MVIR-18-1 delta-9 fatty acid desaturase (desC4) gene, complete cds

Associated references

Displaying 1 - 6 of 6
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Partensky F, Doré H, Ratin M, Maréchal É et al..  2019.  Unveiling membrane thermoregulation strategies in marine picocyanobacteria. New Phytologist. :nph.16239. PDF icon Download pdf (16.94 MB)
Six C, Ratin M, Marie D, Corre E.  2021.  Marine Synechococcus picocyanobacteria: Light utilization across latitudes. Proceedings of the National Academy of Sciences. 118 PDF icon Download pdf (1.31 MB), PDF icon Download pdf (1.15 MB)
Ferrieux M, Dufour L, Doré H, Ratin M, Guéneuguès A, Chasselin L, Marie D, Rigaut-jalabert F, Le Gall F, Sciandra T et al..  2022.  Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology. 13 PDF icon Download pdf (2.17 MB)