RCC2533

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade CRD1
Strain name: 
Biosope_199-Clonal
Strain name synonyms: 
BIOS-U3-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell assemblage: 
chains
Cell shape: 
cylindrical
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Pacific Ocean
Sampling site: 
Chile upwelling
Sampling country: 
Chile
Sampling ecosystem: 
pelagic
Sampling cruise: 
Biosope
Sampling station: 
UPW1
Sampling depth (m): 
5
Sampling date: 
Monday, December 6, 2004
Isolation by: 
Garczarek L. / Marie D.
Isolation method: 
Flow cytometry sorting
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dA
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, April 1, 2011
Mother strain: 
RCC1026
Sampling CTD: 
198
Sampling bottle: 
19
Sampling by: 
Garczarek L. / Marie D.
Isolation preculture number: 
199
Isolation medium: 
Pro2/10
Isolation light: 
100
Deposit to rcc by: 
F. Humily
Purification date: 
Friday, April 1, 2011
Purification by: 
Florian Humily
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY853967 rpmI Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854546 rpsJ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855042 rplC Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014444 ApcB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin beta chain (apcB) gene, complete cds
KF177886 CA4-A Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 CA4-A island genomic sequence
KY853968 rmpJ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854577 rpsG Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855073 rpsA1 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014475 apcD Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF528768 cpeB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY853969 rpsK Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854608 rpsI Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855104 rplS Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014506 apcF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF177887 cpeY Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY853970 rpsL Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854639 rplM Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855135 rpsA2 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014535 cpeF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KF177888 mpeY Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY853971 rpsN Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854670 rpsM Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855166 rpsD Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014576 mpeB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF528806 rpcB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY853972 rpsO Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854701 rpsE Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855197 rpsP Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S16 (rpsP) gene, complete cds
CP047936 Genome Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. BIOS-U3-1 chromosome, complete genome
KU377986 petB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. BIOS-U3-1 cytochrome b6 (petB) gene, complete cds
KY853973 rpsQ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854732 rplF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855228 rpsR Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S18 (rpsR) gene, complete cds
KY853958 rplQ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY853974 rpsS Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854763 rpsH Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855259 rpsB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S2 (rpsB) gene, complete cds
KY853959 rplR Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY853975 rpsU Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854794 rplE Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855290 rpsT Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S20 (rpsT) gene, complete cds
KY853960 rplT Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854329 rplO Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854825 rplX Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855321 rpmA Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L27 (rpmA) gene, complete cds
KY853961 rplV Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854360 rpsF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854856 rplN Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855352 ycf65 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY853962 rpmB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854391 rplI Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854887 rplP Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860801 desC3 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY853963 rpmE Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854422 rplK Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854918 rpsC Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860830 desA3 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY853964 rmpF Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854453 rplA Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854949 rplB Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860852 desA2 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY853965 rmpG Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854484 rplJ Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854980 rplW Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L23 (rplW) gene, complete cds
KY860868 desC4 Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY853966 rpmH Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854515 rplL Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855011 rplD Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014413 apcA Synechococcus sp. BIOS-U3-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. BIOS-U3-1 allophycocyanin alpha chain (apcA) gene, complete cds

Associated references

Displaying 1 - 5 of 5
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Ferrieux M, Dufour L, Doré H, Ratin M, Guéneuguès A, Chasselin L, Marie D, Rigaut-jalabert F, Le Gall F, Sciandra T et al..  2022.  Comparative Thermophysiology of Marine Synechococcus CRD1 Strains Isolated From Different Thermal Niches in Iron-Depleted Areas. Frontiers in Microbiology. 13 PDF icon Download pdf (2.17 MB)
Dufour L, Garczarek L, Gouriou B, Clairet J, Ratin M, Partensky F.  2024.  Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology. 15:1349322. PDF icon Download pdf (2.03 MB)