RCC2553

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade IIIa
Strain name: 
RS9915 Clonal
Strain name synonyms: 
RS9915
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Cell motility: 
motile
ORIGIN
Sampling ocean: 
Indian Ocean
Sampling regional sea: 
Red Sea
Sampling site: 
Gulf of Aqaba
Sampling country: 
Israel
Sampling ecosystem: 
pelagic
Sampling depth (m): 
10
Sampling date: 
Monday, October 18, 1999
Isolation by: 
Fuller N.
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
20.00
RCC transfer period weeks: 
3.00
RCC light: 
20
Phenotype pigment: 
Syn type 3dB
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Monday, July 18, 2011
Mother strain: 
RCC554
Sampling by: 
Fuller N.
Deposit to RCC date: 
Monday, July 18, 2011
Deposit to rcc by: 
F. Humily
Purification date: 
Monday, July 18, 2011
Purification by: 
Morgane Ratin
Purification method: 
Serial platings

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854246 rplQ Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854262 rpsS Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854779 rpsH Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855275 rpsB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S2 (rpsB) gene, complete cds
KY854247 rplR Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L18 (rplR) gene, complete cds
KY854263 rpsU Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854810 rplE Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L5 (rplE) gene, complete cds
KY855306 rpsT Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S20 (rpsT) gene, complete cds
KY854248 rplT Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L20 (rplT) gene, complete cds
KY854345 rplO Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L15 (rplO) gene, complete cds
KY854841 rplX Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L24 (rplX) gene, complete cds
KY855337 rpmA Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L27 (rpmA) gene, complete cds
KY854249 rplV Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L22 (rplV) gene, complete cds
KY854376 rpsF Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854872 rplN Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L14 (rplN) gene, complete cds
KY855368 ycf65 Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854250 rpmB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854407 rplI Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L9 (rplI) gene, complete cds
KY854903 rplP Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L16 (rplP) gene, complete cds
KY860817 desC3 Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854251 rpmE Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854438 rplK Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L11 (rplK) gene, complete cds
KY854934 rpsC Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860843 desA3 Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854252 rmpF Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854469 rplA Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L1 (rplA) gene, complete cds
KY854965 rplB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L2 (rplB) gene, complete cds
KY860862 desA2 Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 delta-12 fatty acid desaturase (desA2) gene, complete cds
KY854253 rmpG Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854500 rplJ Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854996 rplW Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L23 (rplW) gene, complete cds
MG014397 apcA Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 allophycocyanin alpha chain (apcA) gene, complete cds
KY854254 rpmH Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854531 rplL Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855027 rplD Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L4 (rplD) gene, complete cds
MG014428 ApcB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 allophycocyanin beta chain (apcB) gene, complete cds
KY854255 rpmI Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854562 rpsJ Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855058 rplC Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L3 (rplC) gene, complete cds
MG014459 apcD Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 allophycocyanin alpha-B chain (apcD) gene, complete cds
KF177898 CA4-B Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9915 CA4-B island genomic sequence
KY854256 rmpJ Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854593 rpsG Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855089 rpsA1 Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014490 apcF Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 allophycocyanin beta-18 chain (apcF) gene, complete cds
KF528772 cpeB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9915 C-phycoerythrin class I subunit beta (cpeB) and C-phycoerythrin class I subunit alpha (cpeA) genes, complete cds
KY854257 rpsK Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854624 rpsI Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855120 rplS Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L19 (rplS) gene, complete cds
MG014564 mpeB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KF177899 cpeY Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9915 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854258 rpsL Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854655 rplM Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L13 (rplM) gene, complete cds
KY855151 rpsA2 Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S1 (rpsA2) gene, complete cds
CP047934 Genome Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. RS9915 chromosome
KF177900 mpeY Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9915 putative phycoerythrobilin:phycoerythrin II lyase (mpeY) gene, complete cds
KY854259 rpsN Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854686 rpsM Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855182 rpsD Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S4 (rpsD) gene, complete cds
KF528810 rpcB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9915 R-phycocyanin II beta subunit (rpcB) and R-phycocyanin II alpha subunit (rpcA) genes, complete cds
KY854260 rpsO Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854717 rpsE Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855213 rpsP Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S16 (rpsP) gene, complete cds
KT955716 mpeB Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechococcus Synechococcus sp. RS9915 C-phycoerythrin class II beta chain (mpeB) gene, complete cds
KY854261 rpsQ Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854748 rplF Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 50S ribosomal protein L6 (rplF) gene, complete cds
KY855244 rpsR Synechococcus sp. RS9915 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. RS9915 30S ribosomal protein S18 (rpsR) gene, complete cds

Associated references

Displaying 1 - 5 of 5
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Six C, Ratin M, Marie D, Corre E.  2021.  Marine Synechococcus picocyanobacteria: Light utilization across latitudes. Proceedings of the National Academy of Sciences. 118 PDF icon Download pdf (1.31 MB), PDF icon Download pdf (1.15 MB)
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22. PDF icon Download pdf (1.87 MB)
Dufour L, Garczarek L, Gouriou B, Clairet J, Ratin M, Partensky F.  2024.  Differential acclimation kinetics of the two forms of type IV chromatic acclimaters occurring in marine Synechococcus cyanobacteria. Frontiers in Microbiology. 15:1349322. PDF icon Download pdf (2.03 MB)