RCC328

Synechococcus_sp

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Yes - (D) No information on country of origin, resource sampled pre-NP
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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Ib
Strain name: 
PROSOPE_135-5
Strain name synonyms: 
PROS-9-1
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Mediterranean Sea
Sampling ecosystem: 
pelagic
Sampling cruise: 
PROSOPE
Sampling station: 
9
Sampling depth (m): 
30
Sampling date: 
Tuesday, September 28, 1999
Isolation by: 
Partensky F.
Isolation method: 
Filtration < 0.6 µm
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
3.00
RCC light: 
80
Phenotype pigment: 
Syn type 3dA
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Thursday, July 13, 2000
Sampling CTD: 
70
Sampling bottle: 
17
Sampling by: 
Partensky F.
Isolation preculture number: 
135
Isolation medium: 
Pro2/10
Isolation light: 
100
Purification date: 
Thursday, January 27, 2000
Purification by: 
F.Le Gall
Purification method: 
Filtration+Dilution

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854152 rpsO Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854711 rpsE Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855207 rpsP Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014559 fciA Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 putative AraC-type helix-turn-helix DNA-binding domain-containing transcriptional regulator (fciA) and putative AraC-type helix-turn-helix DNA-binding domain-containing transcriptional regulator (fciB) genes, complete cds
JF307534 petB PROSOPE_135-5
KY854153 rpsQ Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854742 rplF Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L6 (rplF) gene, complete cds
KY855238 rpsR Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S18 (rpsR) gene, complete cds
MG014569 mpeB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KY854138 rplQ Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854154 rpsS Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854773 rpsH Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855269 rpsB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S2 (rpsB) gene, complete cds
MG014592 mpeY Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KY854139 rplR Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L18 (rplR) gene, complete cds
KY854155 rpsU Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854804 rplE Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L5 (rplE) gene, complete cds
KY855300 rpsT Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S20 (rpsT) gene, complete cds
MG014606 mpeZ Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 phycoerythrobilin:Cys-83 alpha-phycoerythrin II lyase-isomerase (mpeZ) gene, complete cds
KY854140 rplT Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L20 (rplT) gene, complete cds
KY854339 rplO Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L15 (rplO) gene, complete cds
KY854835 rplX Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L24 (rplX) gene, complete cds
KY855331 rpmA Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L27 (rpmA) gene, complete cds
MG018775 cpeB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 C-phycoerythrin class I beta subunit (cpeB) and C-phycoerythrin class I alpha subunit (cpeA) genes, complete cds
KY854141 rplV Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L22 (rplV) gene, complete cds
KY854370 rpsF Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854866 rplN Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L14 (rplN) gene, complete cds
KY855362 ycf65 Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 ribosomal protein Ycf65 (ycf65) gene, complete cds
CP047961 Genome Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. PROS-9-1 chromosome, complete genome
KY854142 rpmB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854401 rplI Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L9 (rplI) gene, complete cds
KY854897 rplP Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L16 (rplP) gene, complete cds
KY860811 desC3 Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854143 rpmE Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854432 rplK Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L11 (rplK) gene, complete cds
KY854928 rpsC Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860839 desA3 Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854144 rmpF Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854463 rplA Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L1 (rplA) gene, complete cds
KY854959 rplB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L2 (rplB) gene, complete cds
KY860876 desC4 Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854145 rmpG Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854494 rplJ Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854990 rplW Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L23 (rplW) gene, complete cds
MG014403 apcA Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 allophycocyanin alpha chain (apcA) gene, complete cds
KY854146 rpmH Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854525 rplL Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855021 rplD Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L4 (rplD) gene, complete cds
MG014434 ApcB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 allophycocyanin beta chain (apcB) gene, complete cds
KY854147 rpmI Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854556 rpsJ Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855052 rplC Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L3 (rplC) gene, complete cds
MG014465 apcD Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854148 rmpJ Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854587 rpsG Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855083 rpsA1 Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014496 apcF Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854149 rpsK Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854618 rpsI Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855114 rplS Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L19 (rplS) gene, complete cds
MG014519 cpcB Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 phycocyanin beta chain (cpcB) and phycocyanin alpha chain (cpcA) genes, complete cds
KY854150 rpsL Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854649 rplM Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 50S ribosomal protein L13 (rplM) gene, complete cds
KY855145 rpsA2 Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014529 cpeF Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY854151 rpsN Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854680 rpsM Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855176 rpsD Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014543 cpeY Synechococcus sp. PROS-9-1 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. PROS-9-1 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds

Associated references

Displaying 1 - 3 of 3
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.