@article {roux_ecophysiological_2024,
	title = {Ecophysiological response of the cupped oyster Crassostrea gigas exposed to the green dinoflagellate Lepidodinium chlorophorum},
	journal = {Aquaculture},
	year = {2024},
	month = {feb},
	pages = {740644},
	keywords = {RCC6911},
	issn = {00448486},
	doi = {10.1016/j.aquaculture.2024.740644},
	url = {https://linkinghub.elsevier.com/retrieve/pii/S0044848624001054},
	author = {Roux, Pauline and Garc{\'\i}a-Corona, Jos{\'e} Luis and Ragueneau, Stacy and Schapira, Mathilde and Siano, Raffaele and Pernet, Fabrice and Queau, Isabelle and Malestroit, Pascale and Tallec, Kevin and Fleury, Elodie}
}
@article {koslova_endogenous_2024,
	title = {Endogenous virophages are active and mitigate giant virus infection in the marine protist Cafeteria burkhardae},
	journal = {Proceedings of the National Academy of Sciences},
	volume = {121},
	number = {11},
	year = {2024},
	note = {Publisher: Proceedings of the National Academy of Sciences},
	month = {mar},
	pages = {e2314606121},
	abstract = {Endogenous viral elements (EVEs) are common genetic passengers in various protists. Some EVEs represent viral fossils, whereas others are still active. The marine heterotrophic flagellate Cafeteria burkhardae contains several EVE types related to the virophage mavirus, a small DNA virus that parasitizes the lytic giant virus CroV. We hypothesized that endogenous virophages may act as an antiviral defense system in protists, but no protective effect of virophages in wild host populations has been shown so far. Here, we tested the activity of virophage EVEs and studied their impact on giant virus replication. We found that endogenous mavirus-like elements (EMALEs) from globally distributed Cafeteria populations produced infectious virus particles specifically in response to CroV infection. However, reactivation was stochastic, often inefficient, and poorly reproducible. Interestingly, only one of eight EMALE types responded to CroV infection, implying that other EMALEs may be linked to different giant viruses. We isolated and cloned several reactivated virophages and characterized their particles, genomes, and infection dynamics. All tested virophages inhibited the production of CroV during coinfection, thereby preventing lysis of the host cultures in a dose-dependent manner. Comparative genomics of different C. burkhardae strains revealed that inducible EMALEs are common and are not linked to specific geographic locations. We demonstrate that naturally occurring virophage EVEs reactivate upon giant virus infection, thus providing a striking example that eukaryotic EVEs can become active under specific conditions. Moreover, our results support the hypothesis that virophages can act as an adaptive antiviral defense system in protists.},
	keywords = {RCC970},
	doi = {10.1073/pnas.2314606121},
	url = {https://www.pnas.org/doi/full/10.1073/pnas.2314606121},
	author = {Koslov{\'a}, Anna and Hackl, Thomas and Bade, Felix and Sanchez Kasikovic, Alexander and Barenhoff, Karina and Schimm, Fiona and Mersdorf, Ulrike and Fischer, Matthias G.}
}
@booklet {cock_evolutionary_2024,
	title = {Evolutionary genomics of the emergence of brown algae as key components of coastal ecosystems \textbar bioRxiv},
	year = {2024},
	doi = {10.1101/2024.02.19.579948},
	url = {https://www.biorxiv.org/content/10.1101/2024.02.19.579948v1},
	author = {Cock, J Mark}
}
@article {dulong_exopolysaccharide_2024,
	title = {Exopolysaccharide from marine microalgae belonging to the \textit{Glossomastix genus: fragile gel behavior and suspension stability},
	journal = {Bioengineered},
	volume = {15},
	number = {1},
	year = {2024},
	note = {Publisher: Taylor \& Francis _eprint: https://doi.org/10.1080/21655979.2023.2296257},
	month = {dec},
	pages = {2296257},
	abstract = {With the aim to find new polysaccharides of rheological interest with innovated properties, rhamnofucans produced as exopolysaccharides (EPS) in a photobioreactor (PBR) and an airlift bioreactor (ABR) by the marine microalgae Glossomastix sp. RCC3707 and RCC3688 were fully studied. Chemical characterizations have been conducted (UHPLC {\textendash} MS HR). Analyses by size-exclusion chromatography (SEC) coupled online with a multiangle light scattering detector (MALS) and a differential refractive index detector showed the presence of large structures with molar masses higher than 106 g.mol-1. The rheological studies of these EPS solutions, conducted at different concentrations and salinities, have evidenced interesting and rare behavior characteristic of weak and fragile hydrogels i.e. gel behavior with very low elastic moduli (between 10-2 and 10 Pa) and yield stresses (between 10-2 and 2 Pa) according to the EPS source, concentration, and salinity. These results were confirmed by diffusing wave spectroscopy. Finally, as one of potential application, solutions of EPS from Glossomastix sp. have evidenced very good properties as anti-settling stabilizers, using microcrystalline cellulose particles as model, studied by multiple light scattering (MLS) with utilization in cosmetic or food industry. Compared to alginate solution with same viscosity for which sedimentation is observed over few hours, microalgae EPS leads to a stable suspension over few days.},
	keywords = {fragile gel, Glossomastix, Microalgae, Polysaccharide, RCC3688, RCC3707, stabilizer},
	issn = {2165-5979},
	doi = {10.1080/21655979.2023.2296257},
	url = {https://doi.org/10.1080/21655979.2023.2296257},
	author = {Dulong, Virginie and Rihouey, Christophe and Gaignard, Cl{\'e}ment and Bridiau, Nicolas and Gourvil, Priscilla and Laroche, C{\'e}line and Pierre, Guillaume and Varacavoudin, Tony and Probert, Ian and Maugard, Thierry and Michaud, Philippe and Picton, Luc and Le Cerf, Didier}
}
@booklet {sirin_effects_2023,
	title = {Effects of Nitrogen Starvation on Growth and Biochemical Composition of Some Microalgae Species},
	year = {2023},
	month = {apr},
	publisher = {In Review},
	type = {preprint},
	abstract = {Abstract Nitrogen is one of the most important nutrient sources for the growth of microalgae. We studied the effects of nitrogen starvation on the growth responses, biochemical composition and fatty acid profile of Dunaliella tertiolecta, Phaeodactylum tricornutum and Nannochloropsis oculata . The lack of nitrogen caused changes in carbohydrate, protein, lipid and fatty acid composition in all examined microalgae. The carbohydrate content increased 59\% in D. tertiolecta , while the lipid level increased 139\% in P. tricornutum under nitrogen stress conditions. Nitrogen starvation increased the oligosaccharide and polysaccharide contents of D. tertiolecta 4.18-fold and 3.77-fold, respectively. Furthermore, triacylglycerol (TAG) levels in N. oculata and P. tricornutum increased 2.3-fold and 7.4-fold, respectively. The dramatic increase in the amount of TAG is important for the use of these microalgae as raw materials in biodiesel. Nitrogen starvation increased the amounts of oligosaccharides and polysaccharides of D. tertiolecta , while increased eicosapentaenoic acid (EPA) in N. oculata and docosahexaenoic acid (DHA) content in P. tricornutum . The amount of polyunsaturated fatty acids (PUFAs), EPA, DHA, oligosaccharides and polysaccharides in microalgal species can be increased without using the too costly nitrogen source in the culture conditions, which can reduce the most costly of living feeding.},
	keywords = {RCC2967},
	doi = {10.21203/rs.3.rs-2787376/v1},
	url = {https://www.researchsquare.com/article/rs-2787376/v1},
	author = {{\c S}i̇Ri̇N, P{\i}nar AKDO{\u G}AN and Serdar, Serpil}
}
@article {liao_exploring_2023,
	title = {Exploring the theoretical upper temperature limit of alkenone unsaturation indices: Implications for paleotemperature reconstructions},
	journal = {Organic Geochemistry},
	volume = {180},
	year = {2023},
	pages = {104606},
	abstract = {The structural specificity, exceptional diagenetic stability, and linear response of unsaturation to temperature have made alkenones an indispensable tool for reconstructing past sea surface temperatures, with the well known U37K' proxy widely applied in the past 40~years. However, U37K' approaches unity at around 28~{\textdegree}C in cultures of Emiliania huxleyi (E. huxleyi), the most widely distributed alkenone producer in global oceans. Recent studies using surface sediments suggest U38MeK' has \~{}1.5~{\textdegree}C higher upper temperature limits than U37K'. However, E. huxleyi generally does not grow above 28~{\textdegree}C. Gephyrocapsa oceanica (G. oceanica), on the other hand, is the dominant alkenone producer when sea surface temperature is above 22~{\textdegree}C and thrives in ocean regions such as the Pacific Warm Pool. So far there have been no culture data for G. oceanica above 29~{\textdegree}C to evaluate the temperature response of alkenone distributions and the (theoretical) upper temperature limit of alkenone unsaturation indices. Here we performed the first culture experiments on two strains of G. oceanica isolated from warm ocean sites at up to 32~{\textdegree}C: RCC6484 from the Pacific Warm Pool and RCC3483 from the South China Sea. We show both strains display higher growth rates at higher temperature, with the highest growth rates at 32~{\textdegree}C (the highest temperature we tested), although alkenone production per cell decreases as temperature increases. Importantly, U37K' and U38MeK' values of RCC6484 and RCC3483 continue to respond to temperature changes beyond 28~{\textdegree}C, although temperature sensitivity decreases significantly above 28~{\textdegree}C. Above 30~{\textdegree}C, U37K' and U38MeK' responses to temperature further diminish, limiting their potential for paleo-SST applications using the currently available analytical technology. The ratio of C38:3 over C38:2 methyl ketone is on average 11 times higher than the ratio of C37:3 over C37:2 from 24 to 32~{\textdegree}C, suggesting a greater potential of using U38MeK' for paleotemperature reconstruction in high temperature settings.},
	keywords = {Culture experiments, RCC3483, RCC6484, Temperature calibrations},
	issn = {0146-6380},
	doi = {10.1016/j.orggeochem.2023.104606},
	url = {https://www.sciencedirect.com/science/article/pii/S0146638023000529},
	author = {Liao, Sian and Novak, Joseph and Huang, Yongsong}
}
@article {fernandes_effects_2022,
	title = {Effects of phosphorus-induced changes on the growth, nitrogen uptake, and biochemical composition of Pavlova pinguis and Hemiselmis cf. andersenii},
	journal = {Journal of Applied Phycology},
	year = {2022},
	abstract = {The understanding of the phosphorus-induced changes in the biochemical composition of microalgae is of great importance for achieving efficiency in high-value lipid production. To study the chemoplasticity of Pavlova pinguis (Haptophyceae) and Hemiselmis cf. andersenii (Cryptophyceae), their growth, carotenoid and chlorophyll a content, and their monosaccharide and lipid profiles were analyzed against several phosphorus (P) regimes: low (LP), medium (MP), and high (HP). For both microalgal cultures, increasing initial P concentrations showed a positive effect on biomass productivities. Carbon-rich pools presented significant differences (p< 0.05) for P. pinguis against P treatments, in contrast to H. cf. andersenii. Differential responses to P-induced changes in microalgae monosaccharide and lipid profile were observed. Hemiselmis cf. andersenii increased its proportion in galactose (up to 3 times) from LP to HP conditions, whereas P. pinguis decreased (up to 20\%) its glucose proportion from LP to HP conditions. For P. pinguis, the lowest amount (13.12 mg g-1 dw) of sterols was observed at LP conditions, in contrast to its carotenoid content (4.32 mg g-1 dw). P-replete conditions were the most effective in inducing high-value lipid accumulation. Non-targeted lipid analysis revealed which samples would need to be processed to fully exploit its high-value lipids, namely H. cf andersenii under MP and HP conditions. This study demonstrated that P played an important role in carbon allocation, nitrogen uptake, and lipid regulation on P. pinguis and H. cf. andersenii, and that P-replete conditions could be useful for optimizing high-value lipids with potential for nutraceutical and pharmaceutical fields.},
	keywords = {RCC1539},
	issn = {1573-5176},
	doi = {10.1007/s10811-021-02662-2},
	url = {https://doi.org/10.1007/s10811-021-02662-2},
	author = {Fernandes, Tom{\'a}sia and Cordeiro, Nereida}
}
@article {ebenezer_elemental_2022,
	title = {Elemental and macromolecular composition of the marine Chloropicophyceae, a major group of oceanic photosynthetic picoeukaryotes},
	journal = {Limnology and Oceanography},
	volume = {n/a},
	number = {n/a},
	year = {2022},
	note = {_eprint: https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.1002/lno.12013},
	abstract = {Chloropicophyceae (Prasinophyte Clade VII) are small nonmotile coccoid cells with cell diameters ranging from 1 to 3 μm. Molecular surveys indicate they are relatively high in abundance in moderately oligotrophic oceanic waters and may substantively contribute to biogeochemical cycling in the sea. Here, we quantify the elemental and macromolecular composition of three subtropical Chloropicophyceae strains: Chloropicon mariensis, Chloropicon maureeniae, and Chloropicon roscoffensis under nutrient-sufficient exponential growth and nitrate starvation. Under nutrient-sufficient conditions the Chloropicophyceae are high in C : N and quite low in C : P and N : P relative to the canonical Redfield ratio, reflecting their relatively high nucleic acid composition compared to many other phytoplankton taxa. Nitrate starvation causes increases in C : N and C : P and decreases in N : P, primarily due to increases in carbohydrate and lipid and decreases in protein and RNA. There is genetic evidence that unlike most other green algae, Chloropicophyceae are diploid. The high nucleic acid content in the Chloropicon is consistent with the hypothesis that the nucleus, as a nonscalable component, takes up a larger and substantial proportion of cell mass in diploid picoeukaryotes. The elemental and macromolecular composition of these Chloropicophyceae, and relatively homeostatic response to N-starvation compared to diatoms, provides some insight into their success in the moderately oligotrophic ocean.},
	keywords = {RCC138, RCC3374, RCC3375},
	issn = {1939-5590},
	doi = {10.1002/lno.12013},
	url = {http://onlinelibrary.wiley.com/doi/abs/10.1002/lno.12013},
	author = {Ebenezer, Vinitha and Hu, Yingyu and Carnicer, Olga and Irwin, Andrew J. and Follows, Michael J. and Finkel, Zoe V.}
}
@article {pan_effects_2021,
	title = {Effects of Epibiotic Diatoms on the Productivity of the Calanoid Copepod Acartia tonsa (Dana) in Intensive Aquaculture Systems},
	journal = {Frontiers in Marine Science},
	volume = {8},
	year = {2021},
	pages = {1386},
	abstract = {We evaluated here the effects of the epibiotic diatom Tabularia sp. on the productivity of the calanoid copepod Acartia tonsa (Dana) for assessing their risk on copepod intensive aquaculture industry for the provision of live feed. In the first experiment, uninfested and intensively infested females were cultivated individually for the assessment of egg production. Intensively infested females appeared to have a significantly lower egg production (5.0{\textendash}9.0 eggs/female/d) than uninfested females (22.0{\textendash}26.0 eggs/female/d) during 5 consecutive days. In the second experiment, effects of culture densities on diatom epibiosis were investigated in 9 L cultures at three different densities (200, 400, and 600 ind. L{\textendash}1). Another culture at higher volume (250 L) and lowest density (200 ind. L{\textendash}1) was also carried out to test the effect of culture volume on diatom epibiosis. The infestation rate (\%), infestation intensity (ratio of surface diatom coverage levels, classified as levels 0{\textendash}3) and daily egg harvest rate (number of harvested eggs per day per liter) were evaluated among the four culture populations. The copepods had higher infestation rate (53.69{\textendash}60.14\%) and intensity rate (high ratios at level 2 and 3) when the densities were increased from 200 ind./L to 400 and 600 ind./L. Although egg harvest increased with increasing culture density, it seemed that the diatom-infested A. tonsa population reach a saturated egg production when the density was higher than 400 ind./L. Nevertheless, the differences of culture volumes (250 and 9 L) appeared to be not to have any effect when the copepods were cultivated at the same density (200 ind./L). This study reveals for the first time that the epibiosis of the diatom Tabularia sp. reduces the individual egg production, and egg harvest rate in high-density culture of the copepod A. tonsa. Our findings implicate that diatom epibiosis should be avoid in copepod intensive culture systems.},
	keywords = {rcc, RCC350},
	issn = {2296-7745},
	doi = {10.3389/fmars.2021.728779},
	url = {https://www.frontiersin.org/article/10.3389/fmars.2021.728779},
	author = {Pan, Yen-Ju and Wang, Wei-Lung and Hwang, Jiang-Shiou and Souissi, Sami}
}
@article {eich_effects_2021,
	title = {Effects of UV Radiation on the Chlorophyte Micromonas polaris Host{\textendash}Virus Interactions and MpoV-45T Virus Infectivity},
	journal = {Microorganisms},
	volume = {9},
	year = {2021},
	pages = {2429},
	abstract = {Polar seas are under threat of enhanced UV-radiation as well as increasing shipping activities. Considering the ecological importance of marine viruses, it is timely to study the impact of UV-AB on Arctic phytoplankton host{\textendash}virus interactions and also test the efficacy of ballast water (BW) UV-C treatment on virus infectivity. This study examined the effects of: (i) ecologically relevant doses of UV-AB radiation on Micromonas polaris RCC2258 and its virus MpoV-45T, and (ii) UV-C radiation (doses 25{\textendash}800 mJ cm-2) on MpoV-45T and other temperate algal viruses. Total UV-AB exposure was 6, 12, 28 and 48 h (during the light periods, over 72 h total). Strongest reduction in algal growth and photosynthetic efficiency occurred for 28 and 48 h UV-AB treatments, and consequently the virus production rates and burst sizes were reduced by more than half (compared with PAR-only controls). For the shorter UV-AB exposed cultures, negative effects by UV (especially Fv/Fm) were overcome without impacting virus proliferation. To obtain the BW desired log-4 reduction in virus infectivity, a UV-C dose of at least 400 mJ cm-2 was needed for MpoV-45T and the temperate algal viruses. This is higher than the commonly used dose of 300 mJ cm-2 in BW treatment.},
	keywords = {RCC2258},
	doi = {10.3390/microorganisms9122429},
	author = {Eich, Charlotte}
}
@article {benites_evolutionary_2021,
	title = {Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage},
	journal = {Genome Biology and Evolution},
	volume = {13},
	number = {10},
	year = {2021},
	pages = {evab216},
	abstract = {Although sex is now accepted as a ubiquitous and ancestral feature of eukaryotes, direct observation of sex is still lacking in most unicellular eukaryotic lineages. Evidence of sex is frequently indirect and inferred from the identification of genes involved in meiosis from whole genome data and/or the detection of recombination signatures from genetic diversity in natural populations. In haploid unicellular eukaryotes, sex-related chromosomes are named mating-type (MTs) chromosomes and generally carry large genomic regions where recombination is suppressed. These regions have been characterized in Fungi and Chlorophyta and determine gamete compatibility and fusion. Two candidate MT{\th} and MT{\`A} alleles, spanning 450{\textendash}650 kb, have recently been described in Ostreococcus tauri, a marine phytoplanktonic alga from the Mamiellophyceae class, an early diverging branch in the green lineage. Here, we investigate the architecture and evolution of these candidate MT{\th} and MT{\`A} alleles. We analyzed the phylogenetic profile and GC content of MT gene families in eight different genomes whose divergence has been previously estimated at up to 640 Myr, and found evidence that the divergence of the two MT alleles predates speciation in the Ostreococcus genus. Phylogenetic profiles of MT transspecific polymorphisms in gametologs disclosed candidate MTs in two additional species, and possibly a third. These Mamiellales MT candidates are likely to be the oldest mating-type loci described to date, which makes them fascinating models to investigate the evolutionary mechanisms of haploid sex determination in eukaryotes.},
	keywords = {RCC1105, RCC1115, RCC2590, RCC299, rcc3401, RCC4221, RCC809, RCC834},
	issn = {1759-6653},
	doi = {10.1093/gbe/evab216},
	url = {https://academic.oup.com/gbe/article/doi/10.1093/gbe/evab216/6380139},
	author = {Benites, Luis Felipe and Bucchini, Fran{\c c}ois and Sanchez-Brosseau, Sophie and Grimsley, Nigel and Vandepoele, Klaas and Piganeau, Gwenael},
	editor = {Wolfe, Kenneth}
}
@article {bock_experimental_2021,
	title = {Experimental identification and in silico prediction of bacterivory in green algae},
	journal = {The ISME Journal},
	year = {2021},
	note = {Publisher: Nature Publishing Group},
	month = {mar},
	pages = {1{\textendash}14},
	abstract = {While algal phago-mixotrophs play a major role in aquatic microbial food webs, their diversity remains poorly understood. Recent studies have indicated several species of prasinophytes, early diverging green algae, to be able to consume bacteria for nutrition. To further explore the occurrence of phago-mixotrophy in green algae, we conducted feeding experiments with live fluorescently labeled bacteria stained with CellTracker Green CMFDA, heat-killed bacteria stained with 5-(4,6-dichlorotriazin-2-yl) aminofluorescein (DTAF), and magnetic beads. Feeding was detected via microscopy and/or flow cytometry in five strains of prasinophytes when provided with live bacteria: Pterosperma cristatum NIES626, Pyramimonas parkeae CCMP726, Pyramimonas parkeae NIES254, Nephroselmis pyriformis RCC618, and Dolichomastix tenuilepis CCMP3274. No feeding was detected when heat-killed bacteria or magnetic beads were provided, suggesting a strong preference for live prey in the strains tested. In parallel to experimental assays, green algal bacterivory was investigated using a gene-based prediction model. The predictions agreed with the experimental results and suggested bacterivory potential in additional green algae. Our observations underline the likelihood of widespread occurrence of phago-mixotrophy among green algae, while additionally highlighting potential biases introduced when using prey proxy to evaluate bacterial ingestion by algal cells.},
	keywords = {RCC180, RCC3375, RCC369, RCC618},
	issn = {1751-7370},
	doi = {10.1038/s41396-021-00899-w},
	url = {http://www.nature.com/articles/s41396-021-00899-w},
	author = {Bock, Nicholas A. and Charvet, Sophie and Burns, John and Gyaltshen, Yangtsho and Rozenberg, Andrey and Duhamel, Solange and Kim, Eunsoo}
}
@article {Coelho2020,
	title = {Ectocarpus: an evo-devo model for the brown algae},
	journal = {EvoDevo},
	volume = {11},
	number = {1},
	year = {2020},
	note = {ISBN: 1322702000164 Publisher: BioMed Central},
	month = {dec},
	pages = {19},
	keywords = {Brown algae, complex, Complex multicellularity, cycle, Ectocarpus, ectocarpus is a genus, filamentous, Gametophyte, life-cycle, Marine, multicellu-, multicellularity, natural habitat and life, of small, Phaeoviruses, Sex determination, Sporophyte},
	issn = {2041-9139},
	doi = {10.1186/s13227-020-00164-9},
	url = {https://doi.org/10.1186/s13227-020-00164-9 https://evodevojournal.biomedcentral.com/articles/10.1186/s13227-020-00164-9},
	author = {Coelho, Susana M and Peters, Akira F and M{\"u}ller, Dieter and Cock, J Mark}
}
@article {Thorel2020,
	title = {Effect of 10 UV filters on the brine shrimp Artemia salina and themarinemicroalga Tetraselmis sp.},
	journal = {Toxics},
	volume = {8},
	number = {2},
	year = {2020},
	note = {Publisher: MDPI AG tex.mendeley-tags: RCC500},
	month = {jun},
	pages = {29},
	abstract = {The presence of pharmaceutical and personal care product (PPCP) residues in the aquatic environment is an emerging issue due to their uncontrolled release through gray water, and accumulation in the environment that may affect living organisms, ecosystems and public health. The aim of this study is to assess the toxicity of benzophenone-3 (BP-3), bis-ethylhexyloxyphenol methoxyphenyl triazine (BEMT), butyl methoxydibenzoylmethane (BM), methylene bis-benzotriazolyl tetramethylbutylphenol (MBBT), 2-ethylhexyl salicylate (ES), diethylaminohydroxybenzoyl hexyl benzoate (DHHB), diethylhexyl butamido triazone (DBT), ethylhexyl triazone (ET), homosalate (HS) and octocrylene (OC) on marine organisms from two major trophic levels, including autotrophs (Tetraselmis sp.) and heterotrophs (Artemia salina). In general, results showed that both HS and OC were the most toxic UV filters for our tested species, followed by a significant effect of BM on Artemia salina due to BM-but only at high concentrations (1 mg/L). ES, BP3 and DHHB affected the metabolic activity of the microalgae at 100 ??g/L. BEMT, DBT, ET, MBBT had no effect on the tested organisms, even at high concentrations (2 mg/L). OC toxicity represents a risk for those species, since concentrations used in this study are 15-90 times greater than those reported in occurrence studies for aquatic environments. For the first time in the literature, we report HS toxicity on a microalgae species at concentrations complementing those found in aquatic environments. These preliminary results could represent a risk in the future if concentrations of OC and HS continue to increase.},
	keywords = {Artemia salina, marine environment, Marine microalgae, RCC500, Toxicity tests, UV-filters},
	issn = {23056304},
	doi = {10.3390/TOXICS8020029},
	url = {www.mdpi.com/journal/toxics},
	author = {Thorel, Evane and Clergeaud, Fanny and Jaugeon, Lucie and Rodrigues, Alice M.S. and Lucas, Julie and Stien, Didier and Lebaron, Philippe}
}
@article {Klintzsch2020,
	title = {Effects of temperature and light on methane production of widespread marine phytoplankton},
	journal = {Journal of Geophysical Research: Biogeosciences},
	volume = {125},
	number = {9},
	year = {2020},
	note = {Publisher: American Geophysical Union (AGU) tex.mendeley-tags: RCC1216},
	month = {sep},
	keywords = {RCC1216},
	issn = {2169-8953},
	doi = {10.1029/2020jg005793},
	url = {https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2020JG005793 https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2020JG005793 https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2020JG005793},
	author = {Klintzsch, T. and Langer, G. and Wieland, A. and Geisinger, H. and Lenhart, K. and Nehrke, G. and Keppler, F.}
}
@article {Morais2020,
	title = {Electrochemical genosensor for the detection of Alexandrium minutum dinoflagellates},
	journal = {Talanta},
	year = {2020},
	note = {Publisher: Elsevier B.V. tex.mendeley-tags: RCC3029},
	pages = {121416},
	keywords = {RCC3029},
	issn = {00399140},
	doi = {10.1016/j.talanta.2020.121416},
	url = {https://doi.org/10.1016/j.talanta.2020.121416 https://linkinghub.elsevier.com/retrieve/pii/S0039914020307074},
	author = {Morais, Stephanie L. and Barros, Piedade and Santos, Marlene and Delerue-Matos, Cristina and Gomes, Andreia C. and F{\'a}tima Barroso, M.}
}
@article {Dore2020,
	title = {Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria},
	journal = {Frontiers in Microbiology},
	volume = {11},
	number = {September},
	year = {2020},
	note = {tex.mendeley-tags: RCC1084,RCC1085,RCC1086,RCC1087,RCC156,RCC158,RCC162,RCC2033,RCC2035,RCC2319,RCC2366,RCC2368,RCC2369,RCC2374,RCC2376,RCC2378,RCC2379,RCC2380,RCC2381,RCC2382,RCC2383,RCC2385,RCC2433,RCC2436,RCC2438,RCC2527,RCC2528,RCC2533,RCC2534,RCC2535,RCC2553,RCC2554,RCC2555,RCC2556,RCC2571,RCC2673,RCC278,RCC296,RCC307,RCC328,RCC3377,RCC407,RCC515,RCC539,RCC555,RCC556,RCC752,RCC753,RCC791},
	month = {sep},
	pages = {1{\textendash}23},
	keywords = {amino-acid substitutions, comparative genomics, evolution, genomic islands, marine cyanobacteria, niche adaptation, Prochlorococcus, rcc1084, RCC1085, RCC1086, RCC1087, RCC156, RCC158, rcc162, RCC2033, RCC2035, RCC2319, RCC2366, RCC2368, RCC2369, RCC2374, RCC2376, RCC2378, RCC2379, rcc2380, RCC2381, rcc2382, RCC2383, RCC2385, RCC2433, RCC2436, RCC2438, RCC2527, RCC2528, RCC2533, RCC2534, RCC2535, RCC2553, RCC2554, RCC2555, RCC2556, RCC2571, RCC2673, RCC278, rcc296, RCC307, RCC328, RCC3377, RCC407, RCC515, rcc539, rcc555, RCC556, rcc752, RCC753, rcc791, Synechococcus},
	issn = {1664-302X},
	doi = {10.3389/fmicb.2020.567431},
	url = {https://www.frontiersin.org/article/10.3389/fmicb.2020.567431/full},
	author = {Dor{\'e}, Hugo and Farrant, Gregory K. and Guyet, Ulysse and Haguait, Julie and Humily, Florian and Ratin, Morgane and Pitt, Frances D. and Ostrowski, Martin and Six, Christophe and Brillet-Gu{\'e}guen, Loraine and Hoebeke, Mark and Bisch, Antoine and Le Corguill{\'e}, Gildas and Corre, Erwan and Labadie, Karine and Aury, Jean-Marc and Wincker, Patrick and Choi, Dong Han and Noh, Jae Hoon and Eveillard, Damien and Scanlan, David J. and Partensky, Fr{\'e}d{\'e}ric and Garczarek, Laurence}
}
@article {Barton2020,
	title = {Evolutionary temperature compensation of carbon fixation in marine phytoplankton},
	journal = {Ecology Letters},
	year = {2020},
	note = {tex.mendeley-tags: RCC1303,RCC1512,RCC1773,RCC4221,RCC623,RCC626,RCC652,RCC80,RCC834},
	month = {feb},
	pages = {ele.13469},
	abstract = {The efficiency of carbon sequestration by the biological pump could decline in the coming decades because respiration tends to increase more with temperature than photosynthesis. Despite these differences in the short-term temperature sensitivities of photosynthesis and respiration, it remains unknown whether the long-term impacts of global warming on metabolic rates of phytoplankton can be modulated by evolutionary adaptation. We found that respiration was consistently more temperature dependent than photosynthesis across 18 diverse marine phytoplankton, resulting in universal declines in the rate of carbon fixation with short-term increases in temperature. Long-term experimental evolution under high temperature reversed the short-term stimulation of metabolic rates, resulting in increased rates of carbon fixation. Our findings suggest that thermal adaptation may therefore have an ameliorating impact on the efficiency of phytoplankton as primary mediators of the biological carbon pump.},
	keywords = {climate change, evolutionary ecology, metabolism, phytoplankton physiology, RCC1303, rcc1512, RCC1773, RCC4221, RCC623, RCC626, RCC652, RCC80, RCC834, thermal performance curves},
	issn = {1461-023X},
	doi = {10.1111/ele.13469},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/ele.13469},
	author = {Barton, Samuel and Jenkins, James and Buckling, Angus and Schaum, C.-Elisa and Smirnoff, Nicholas and Raven, John A. and Yvon-Durocher, Gabriel},
	editor = {Ezenwa, Vanessa}
}
@article {Lorenzo2019,
	title = {Effects of elevated co 2 on growth, calcification and spectral dependence of photoinhibition in the coccolithophore Emiliania huxleyi (Prymnesiophyceae)},
	journal = {Journal of Phycology},
	year = {2019},
	note = {tex.mendeley-tags: RCC1226},
	month = {may},
	pages = {jpy.12885},
	keywords = {rcc1226},
	issn = {0022-3646},
	doi = {10.1111/jpy.12885},
	url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/jpy.12885},
	author = {Lorenzo, M. Rosario and Neale, Patrick J. and Sobrino, Cristina and Le{\'o}n, Pablo and V{\'a}zquez, V{\'\i}ctor and Bresnan, Eileen and Segovia, Mar{\'\i}a}
}
@article {Kazamia2018,
	title = {Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms},
	journal = {Science Advances},
	volume = {4},
	number = {5},
	year = {2018},
	note = {tex.mendeley-tags: RCC2967},
	month = {may},
	pages = {eaar4536},
	keywords = {RCC2967},
	issn = {2375-2548},
	doi = {10.1126/sciadv.aar4536},
	url = {http://advances.sciencemag.org/lookup/doi/10.1126/sciadv.aar4536},
	author = {Kazamia, Elena and Sutak, Robert and Paz-Yepes, Javier and Dorrell, Richard G and Vieira, Fabio Rocha Jimenez and Mach, Jan and Morrissey, Joe and Leon, S{\'e}bastien and Lam, France and Pelletier, Eric and Camadro, Jean-michel and Bowler, Chris and Lesuisse, Emmanuel}
}
@article {Walter2017,
	title = {Ecogenomics and taxonomy of cyanobacteria phylum},
	journal = {Frontiers in Microbiology},
	volume = {8},
	number = {November},
	year = {2017},
	note = {tex.mendeley-tags: RCC307},
	month = {nov},
	keywords = {charting biodiversity, ecological niches, genome-based microbial taxonomy, high-throughput sequencing technology, metagenome, microbial ecology, RCC307},
	issn = {1664-302X},
	doi = {10.3389/fmicb.2017.02132},
	url = {http://journal.frontiersin.org/article/10.3389/fmicb.2017.02132/full},
	author = {Walter, Juline M. and Coutinho, Felipe H. and Dutilh, Bas E. and Swings, Jean and Thompson, Fabiano L. and Thompson, Cristiane C.}
}
@article {Ruiz2017,
	title = {Emerging interaction patterns in the emiliania huxleyi-EhV system},
	journal = {Viruses},
	volume = {9},
	number = {3},
	year = {2017},
	note = {tex.mendeley-tags: RCC1211,RCC1213,RCC1215,RCC1216,RCC1218,RCC1228,RCC1231,RCC1235,RCC1239,RCC1241,RCC1242,RCC1246,RCC1249,RCC1250,RCC1253,RCC1255,RCC1256,RCC1257,RCC1259,RCC1268,RCC1269,RCC1272,RCC1276,RCC1322,RCC1744,RCC1745,RCC1857,RCC3548,RCC3856,RCC3923,RCC3956},
	month = {mar},
	pages = {61},
	abstract = {Viruses are thought to be fundamental in driving microbial diversity in the oceanic planktonic realm. That role and associated emerging infection patterns remain particularly elusive for eukaryotic phytoplankton and their viruses. Here we used a vast number of strains from the model system Emiliania huxleyi/Emiliania huxleyi Virus to quantify parameters such as growth rate ({\textmu}), resistance (R), and viral production (Vp) capacities. Algal and viral abundances were monitored by flow cytometry during 72-h incubation experiments. The results pointed out higher viral production capacity in generalist EhV strains, and the virus-host infection network showed a strong co-evolution pattern between E. huxleyi and EhV populations. The existence of a trade-off between resistance and growth capacities was not confirme},
	keywords = {algae virus, coccolithophore, coccolithovirus, cost of, haptophyta, infectivity trade-offs, killing-the-winner, marine viral ecology, phycodnaviridae, RCC1211, RCC1213, RCC1215, RCC1216, RCC1218, RCC1228, RCC1231, RCC1235, RCC1239, RCC1241, RCC1242, RCC1246, RCC1249, RCC1250, RCC1253, RCC1255, rcc1256, RCC1257, RCC1259, RCC1268, RCC1269, RCC1272, RCC1276, RCC1322, RCC1744, RCC1745, RCC1857, RCC3548, RCC3856, RCC3923, RCC3956, resistance, viral-host interactions},
	issn = {1999-4915},
	doi = {10.3390/v9030061},
	url = {http://www.mdpi.com/1999-4915/9/3/61},
	author = {Ruiz, Eliana and Oosterhof, Monique and Sandaa, Ruth-Anne and Larsen, Aud and Pagarete, Ant{\'o}nio}
}
@article {Moutier2017,
	title = {Evolution of the scattering properties of phytoplankton cells from flow cytometry measurements},
	journal = {PLoS ONE},
	volume = {12},
	number = {7},
	year = {2017},
	note = {ISBN: 1111111111 tex.mendeley-tags: RCC1,RCC950},
	abstract = {Combining a modern, data-analytic perspective with a focus on applications in the social sciences, the Second Edition of Applied Regression Analysis and Generalized Linear Models provides in-depth coverage of regression analysis, generalized linear models, and closely related methods. Although the text is largely accessible to readers with a modest background in statistics and mathematics, author John Fox also presents more advanced material throughout the book. Key Updates to the Second Edition:Provides greatly enhanced coverage of generalized linear models, with an emphasis on models for categorical and count data Offers new chapters on missing data in regression models and on methods of model selection Includes expanded treatment of robust regression, time-series regression, nonlinear regression, and nonparametric regression Incorporates new examples using larger data sets Includes an extensive Web site at http://www.sagepub.com/fox that presents appendixes, data sets used in the book and for data-analytic exercises, and the data-analytic exercises themselves Intended Audience: This core text will be a valuable resource for graduate students and researchers in the social sciences (particularly sociology, political science, and psychology) and other disciplines that employ linear and related models for data analysis. High Praise for the First Edition: Even though the book is written with social scientists as the target audience, the depth of material and how it is conveyed give it far broader appeal. Indeed, I recommend it as a useful learning text and resource for researchers and students in any field that applies regression or linear models (that is, most everyone), including courses for undergraduate statistics majors.... The author is to be commended for giving us this book, which I trust will find a wide and enduring readership.-JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION [T]his wonderfully comprehensive book focuses on regression analysis and linear models.... We enthusiastically recommend this book {\textemdash} having used it in class, we know that it is thorough and well liked by students. -CHANCE},
	keywords = {RCC1, RCC950},
	issn = {19326203},
	doi = {10.1371/journal.pone.0181180},
	author = {Moutier, William and Dufor{\^e}t-Gaurier, Lucile and Thyssen, M{\'e}lilotus and Loisel, Hubert and M{\'e}riaux, Xavier and Courcot, Lucie and Dessailly, David and R{\^e}ve, Anne H{\'e}l{\`e}ne and Gr{\'e}gori, Gerald and Alvain, S{\'e}verine and Barani, Aude and Brutier, Laurent and Dugenne, Mathilde}
}
@article {Supraha2015,
	title = {Eco-physiological adaptation shapes the response of calcifying algae to nutrient limitation},
	journal = {Scientific Reports},
	volume = {5},
	number = {November},
	year = {2015},
	note = {Publisher: Nature Publishing Group tex.mendeley-tags: 2015,RCC1323,RCC1334},
	pages = {16499},
	keywords = {2015, RCC1323, RCC1334},
	issn = {2045-2322},
	doi = {10.1038/srep16499},
	url = {http://www.nature.com/articles/srep16499},
	author = {{\v S}upraha, Luka and Gerecht, Andrea C. and Probert, Ian and Henderiks, Jorijntje}
}
@article {Varkey2015,
	title = {Effects of low temperature on tropical and temperate isolates of marine Synechococcus},
	journal = {The ISME Journal},
	year = {2015},
	note = {Publisher: Nature Publishing Group tex.mendeley-tags: rcc},
	pages = {1{\textendash}12},
	keywords = {rcc},
	issn = {1751-7362},
	doi = {10.1038/ismej.2015.179},
	url = {http://www.nature.com/doifinder/10.1038/ismej.2015.179},
	author = {Varkey, Deepa and Mazard, Sophie and Ostrowski, Martin and Tetu, Sasha G and Haynes, Paul and Paulsen, Ian T}
}
@article {Schaum2015,
	title = {Environmental stability affects phenotypic evolution in a globally distributed marine picoplankton},
	journal = {The ISME Journal},
	year = {2015},
	note = {tex.mendeley-tags: oth95,rcc1107,rcc1108,rcc1114,rcc1558,rcc1645,rcc1662,rcc410,rcc422,rcc434,rcc501,rcc675,rcc747,rcc789,rcc809,rcc810},
	pages = {1{\textendash}10},
	abstract = {Marine phytoplankton can evolve rapidly when confronted with aspects of climate change because of their large population sizes and fast generation times. Despite this, the importance of environment fluctuations, a key feature of climate change, has received little attention{\textemdash}selection experiments with marine phytoplankton are usually carried out in stable environments and use single or few representatives of a species, genus or functional group. Here we investigate whether and by how much environmental fluctuations contribute to changes in ecologically important phytoplankton traits such as C:N ratios and cell size, and test the variability of changes in these traits within the globally distributed species Ostreococcus. We have evolved 16 physiologically distinct lineages of Ostreococcus at stable high CO2 (1031{\textpm}87 ??atm CO2 , SH) and fluctuating high CO2 (1012{\textpm}244 ??atm CO2 , FH) for 400 generations.We find that although both fluctuation and high CO2 drive evolution, FH- evolved lineages are smaller, have reduced C:N ratios and respond more strongly to further increases in CO2 than do SH-evolved lineages. This indicates that environmental fluctuations are an important factor to consider when predicting how the characteristics of future phytoplankton populations will have an impact on biogeochemical cycles and higher trophic levels in marine food webs.},
	keywords = {oth95, rcc1107, RCC1108, RCC1114, RCC1558, rcc1645, rcc1662, rcc410, rcc422, RCC434, rcc501, rcc675, rcc747, RCC789, RCC809, rcc810},
	issn = {1751-7362},
	doi = {10.1038/ismej.2015.102},
	url = {http://www.nature.com/doifinder/10.1038/ismej.2015.102},
	author = {Schaum, C-Elisa and Rost, Bj{\"o}rn and Collins, Sin{\'e}ad}
}
@article {Wheeler2015,
	title = {Evolution of alternative biosynthetic pathways for vitamin C following plastid acquisition in photosynthetic eukaryotes},
	journal = {eLife},
	volume = {4},
	year = {2015},
	note = {ISBN: 8196242115 tex.mendeley-tags: RCC299},
	pages = {1{\textendash}25},
	abstract = {Ascorbic acid (vitamin C) is an enzyme co-factor in eukaryotes that also plays a critical role in protecting photosynthetic eukaryotes against damaging reactive oxygen species derived from the chloroplast. Many animal lineages, including primates, have become ascorbate auxotrophs due to the loss of the terminal enzyme in their biosynthetic pathway, L-gulonolactone oxidase (GULO). The alternative pathways found in land plants and Euglena use a different terminal enzyme, L-galactonolactone dehydrogenase (GLDH). The evolutionary processes leading to these differing pathways and their contribution to the cellular roles of ascorbate remain unclear. Here we present molecular and biochemical evidence demonstrating that GULO was functionally replaced with GLDH in photosynthetic eukaryote lineages following plastid acquisition. GULO has therefore been lost repeatedly throughout eukaryote evolution. The formation of the alternative biosynthetic pathways in photosynthetic eukaryotes uncoupled ascorbate synthesis from hydrogen peroxide production and likely contributed to the rise of ascorbate as a major photoprotective antioxidant.},
	keywords = {ascorbate, evolutionary biology, Galdieria, genomics, L-gulonolactone oxidase, plant biology, Porphyra, RCC299, vitamin C},
	issn = {2050084X},
	doi = {10.7554/eLife.06369},
	author = {Wheeler, Glen and Ishikawa, Takahiro and Pornsaksit, Varissa and Smirnoff, Nicholas}
}
@article {hamilton_exposure_2014,
	title = {Exposure to bloom-like concentrations of two marine Synechococcus cyanobacteria (strains CC9311 and CC9902) differentially alters fish behaviour},
	journal = {Conservation Physiology},
	volume = {2},
	number = {cou020},
	year = {2014},
	abstract = {Coastal California experiences large-scale blooms of Synechococcus cyanobacteria, which are predicted to become more prevalent by the end of the 21st century as a result of global climate change. This study investigated whether exposure to bloom-like concentrations of two Synechococcus strains, CC9311 and CC9902, alters fish behaviour. Black perch (Embiotoca jacksoni) were exposed to Synechococcus strain CC9311 or CC9902 (1.5 {\texttimes} 106 cells ml-1) or to control seawater in experimental aquaria for 3 days. Fish movement inside a testing arena was then recorded and analysed using video camera-based motion-tracking software. Compared with control fish, fish exposed to CC9311 demonstrated a significant preference for the dark zone of the tank in the light{\textendash}dark test, which is an indication of increased anxiety. Furthermore, fish exposed to CC9311 also had a statistically significant decrease in velocity and increase in immobility and they meandered more in comparison to control fish. There was a similar trend in velocity, immobility and meandering in fish exposed to CC9902, but there were no significant differences in behaviour or locomotion between this group and control fish. Identical results were obtained with a second batch of fish. Additionally, in this second trial we also investigated whether fish would recover after a 3 day period in seawater without cyanobacteria. Indeed, there were no longer any significant differences in behaviour among treatments, demonstrating that the sp. CC9311-induced alteration of behaviour is reversible. These results demonstrate that blooms of specific marine Synechococcus strains can induce differential sublethal effects in fish, namely alterations light{\textendash}dark preference behaviour and motility.},
	keywords = {RCC1086},
	issn = {2051-1434},
	doi = {10.1093/conphys/cou020},
	url = {https://doi.org/10.1093/conphys/cou020},
	author = {Hamilton, T. J. and Paz-Yepes, J. and Morrison, R. A. and Palenik, B. and Tresguerres, M.}
}
@article {Stern2012,
	title = {Evaluating the ribosomal internal transcribed spacer (ITS) as a candidate dinoflagellate barcode marker},
	journal = {PLoS ONE},
	volume = {7},
	year = {2012},
	note = {tex.mendeley-tags: 2012,rcc,sbr?hyto$_\textrmd$ipo},
	pages = {e42780},
	keywords = {2012, ASSEMBLE, Barcoding, ITS, rcc, SBR$_\textrmP$hyto$_\textrmD$PO, sbr?hyto$_\textrmd$ipo},
	doi = {10.1371/journal.pone.0042780},
	url = {http://www.plosone.org/article/info\%253Adoi\%252F10.1371\%252Fjournal.pone.0042780},
	author = {Stern, Rowena F and Andersen, Robert A and Jameson, Ian and K{\"u}pper, Frithjof C and Coffroth, Mary-Alice and Vaulot, Daniel and Gall, Florence Le and Veron, Benoit and Brand, Jerry J and Skelton, Hayley and Kasai, Fumai and Lilly, Emily L and Keeling, Patrick J}
}
@article {Scanlan2009,
	title = {Ecological genomics of marine picocyanobacteria},
	journal = {Microbiology and Molecular Biology Reviews},
	volume = {73},
	year = {2009},
	note = {tex.mendeley-tags: 2009,rcc,sbr?hyto?app},
	pages = {249{\textendash}299},
	keywords = {2009, rcc, SBR$_\textrmP$hyto$_\textrmP$PM, sbr?hyto?app},
	doi = {10.1128/MMBR.00035-08},
	author = {Scanlan, D J and Ostrowski, M and Mazard, S and Dufresne, A and Garczarek, L and Hess, W R and Post, A F and Hagemann, M and Paulsen, I and Partensky, F}
}
@article {Gadler2009,
	title = {Enantiocomplementary inverting sec-alkylsulfatase activity in cyano- and thio-bacteria Synechococcus and Paracoccus spp.: selectivity enhancement by medium engineering},
	journal = {Tetrahedron: Asymmetry},
	volume = {20},
	year = {2009},
	note = {tex.mendeley-tags: rcc},
	pages = {115{\textendash}118},
	keywords = {rcc},
	doi = {10.1016/j.tetasy.2009.01.007},
	author = {Gadler, Petra and Reiter, Tamara C and Hoelsch, Kathrin and Weuster-Botz, Dirk and Fabe, Kurt}
}
@article {Liu2009,
	title = {Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans},
	journal = {Proceedings of the National Academy of Sciences of the United States of America},
	volume = {106},
	year = {2009},
	note = {tex.mendeley-tags: 2009,rcc,sbr?hyto?ppo},
	pages = {12803{\textendash}12808},
	keywords = {2009, rcc, SBR$_\textrmP$hyto$_\textrmE$PPO, sbr?hyto?ppo},
	doi = {10.1073/pnas.0905841106},
	author = {Liu, H and Probert, I and Uitz, J and Claustre, H and Aris-Brossou, S and Frada, M and Not, F and de Vargas, C}
}
@article {Foulon2008,
	title = {Ecological niche partitioning in the picoplanktonic green alga Micromonas pusilla: evidence from environmental surveys using phylogenetic probes},
	journal = {Environmental Microbiology},
	volume = {10},
	year = {2008},
	note = {tex.mendeley-tags: 2008,rcc,sbr?hyto$_\textrmd$ipo},
	pages = {2433{\textendash}2443},
	keywords = {2008, rcc, SBR$_\textrmP$hyto$_\textrmD$PO, sbr?hyto$_\textrmd$ipo},
	doi = {10.1111/j.1462-2920.2008.01673.x},
	author = {Foulon, E and Not, F and Jalabert, F and Cariou, T and Massana, R and Simon, N}
}
@article {Claquin2008,
	title = {Effects of temperature on photosynthetic parameters and TEP production in eight species of marine microalgae},
	journal = {Aquatic Microbial Ecology},
	volume = {51},
	year = {2008},
	note = {tex.mendeley-tags: 2008,rcc},
	pages = {1{\textendash}11},
	keywords = {2008, rcc, SBR$_\textrmP$hyto},
	doi = {10.3354/ame01187},
	author = {Claquin, Pascal and Probert, Ian and Lefebvre, S{\'e}bastien and Veron, Benoit}
}
@article {Waters2007,
	title = {Evolutionary analysis of the small heat shock proteins in five complete algal genomes},
	journal = {Journal of Molecular Evolution},
	volume = {65},
	number = {2},
	year = {2007},
	note = {tex.mendeley-tags: RCC,rcc},
	pages = {162{\textendash}174},
	abstract = {Small heat shock proteins (sHSPs) are chaperones that are crucial in the heat shock response but also have important nonstress roles within the cell. sHSPs are found in all three domains of life (Bacteria, Archaea, and Eukarya). These proteins are particularly diverse within land plants and the evolutionary origin of the land plant sHSP families is still an open question. Here we describe the identification of 17 small sHSPs from the complete genome sequences of five diverse algae: Chlamydomonas reinhardtii, Cyanidioschyzon merolae, Ostreococcus lucimarinus, Ostreococcus tauri, and Thalassiosira pseudonana. Our analysis indicates that the number and diversity of algal sHSPs are not correlated with adaptation to extreme conditions. While all of the algal sHSPs identified are members of this large and important superfamily, none of these sHSPs are members of the diverse land plant sHSP families. The evolutionary relationships among the algal sHSPs and homologues from bacteria and other eukaryotes are consistent with the hypothesis that the land plant chloroplast and mitochondrion sHSPs did not originate from the endosymbionts of the chloroplast and mitochondria. In addition the evolutionary history of the sHSPs is very different from that of the HSP70s. Finally, our analysis of the algal sHSPs sequences in light of the known sHSP crystal structures and functional data suggests that the sHSPs possess considerable structural and functional diversity.},
	keywords = {*Evolution, *Genome, algae, Algae/classification/*genetics, Algal Proteins/*genetics, Amino Acid Sequence, Animals, Chlamydomonas reinhardtii/genetics, Diatoms/genetics, Green/genetics, Heat-Shock Proteins, Molecular, Molecular Sequence Data, phylogeny, Protein, rcc, Red/genetics, Sequence Alignment, Sequence Analysis, Small/*genetics, Species Specificity},
	url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve\&db=PubMed\&dopt=Citation\&list_uids=17684698},
	author = {Waters, E R and Rioflorido, I}
}
@article {Lobanov2007,
	title = {Evolutionary dynamics of eukaryotic selenoproteomes: large selenoproteomes may associate with aquatic life and small with terrestrial life},
	journal = {Genome Biology},
	volume = {8},
	number = {9},
	year = {2007},
	note = {tex.mendeley-tags: RCC,rcc},
	pages = {R198},
	abstract = {BACKGROUND: Selenocysteine (Sec) is a selenium-containing amino acid that is co-translationally inserted into nascent polypeptides by recoding UGA codons. Selenoproteins occur in both eukaryotes and prokaryotes, but the selenoprotein content of organisms (selenoproteome) is highly variable and some organisms do not utilize Sec at all. RESULTS: We analyzed the selenoproteomes of several model eukaryotes and detected 26 and 29 selenoprotein genes in the green algae Ostreococcus tauri and Ostreococcus lucimarinus, respectively, five in the social amoebae Dictyostelium discoideum, three in the fly Drosophila pseudoobscura, and 16 in the diatom Thalassiosira pseudonana, including several new selenoproteins. Distinct selenoprotein patterns were verified by metabolic labeling of O. tauri and D. discoideum with 75Se. More than half of the selenoprotein families were shared by unicellular eukaryotes and mammals, consistent with their ancient origin. Further analyses identified massive, independent selenoprotein losses in land plants, fungi, nematodes, insects and some protists. Comparative analyses of selenoprotein-rich and -deficient organisms revealed that aquatic organisms generally have large selenoproteomes, whereas several groups of terrestrial organisms reduced their selenoproteomes through loss of selenoprotein genes and replacement of Sec with cysteine. CONCLUSION: Our data suggest many selenoproteins originated at the base of the eukaryotic domain and show that the environment plays an important role in selenoproteome evolution. In particular, aquatic organisms apparently retained and sometimes expanded their selenoproteomes, whereas the selenoproteomes of some terrestrial organisms were reduced or completely lost. These findings suggest a hypothesis that, with the exception of vertebrates, aquatic life supports selenium utilization, whereas terrestrial habitats lead to reduced use of this trace element due to an unknown environmental factor.},
	keywords = {rcc},
	url = {http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve\&db=PubMed\&dopt=Citation\&list_uids=17880704},
	author = {Lobanov, A V and Fomenko, D E and Zhang, Y and Sengupta, A and Hatfield, D L and Gladyshev, V N}
}
@article {Rodriguez2005h,
	title = {Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae).},
	journal = {Environmental Microbiology},
	volume = {7},
	year = {2005},
	note = {tex.mendeley-tags: RCC113,RCC143,RCC343,RCC356,RCC371,RCC393,RCC410,RCC420,RCC434,RCC501,RCC658,RCC745,Rcc141},
	pages = {853{\textendash}859},
	keywords = {rcc, RCC113, Rcc141, RCC143, RCC343, RCC356, RCC371, RCC393, rcc410, RCC420, RCC434, rcc501, RCC658, RCC745, SBR$_\textrmP$hyto$_\textrmD$PO},
	doi = {10.1111/j.1462-2920.2005.00758.x},
	author = {Rodriguez, F and Derelle, E and Guillou, L and Le Gall, F and Vaulot, D and Moreau, H}
}
