RCC2035

Synechococcus_sp

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IDENTITY

Synechococcus_sp

Domain: 
Bacteria
Division: 
Cyanophyta
Class: 
Cyanophyceae
Order: 
Synechococcales
Family: 
Synechococcaceae
Genus: 
Synechococcus
Clade: 
subcluster 5.1 - clade Ib
Strain name: 
Syn 20
Strain name synonyms: 
SYN20
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Atlantic Ocean
Sampling site: 
Raunefjorden
Sampling country: 
Norway
Sampling substrate: 
water
Sampling ecosystem: 
pelagic
Sampling depth (m): 
2
Sampling date: 
Tuesday, June 1, 2004
Isolation by: 
Sandaa R.A.
CULTURE CONDITIONS
RCC medium: 
PCR-S11-Red Sea
RCC temperature: 
22.00
RCC transfer period weeks: 
4.00
RCC light: 
80
Phenotype pigment: 
Syn type 3a
Remark: 
Genome sequenced by Genoscope
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Wednesday, May 19, 2010
Sampling by: 
Sandaa R.A.
Deposit to RCC date: 
Monday, April 12, 2010
Deposit to rcc by: 
D. Scanlan

Sequences available for this RCC strain

GenBank Accession Gene name Genbank organism Genbank taxonomy Description
KY854267 rplV Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L22 (rplV) gene, complete cds
KY854377 rpsF Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S6 (rpsF) gene, complete cds
KY854873 rplN Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L14 (rplN) gene, complete cds
KY855369 ycf65 Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 ribosomal protein Ycf65 (ycf65) gene, complete cds
KY854268 rpmB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L28 (rpmB) gene, complete cds
KY854408 rplI Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L9 (rplI) gene, complete cds
KY854904 rplP Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L16 (rplP) gene, complete cds
KY860818 desC3 Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 delta-9 fatty acid desaturase (desC3) gene, complete cds
KY854269 rpmE Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L31 (rpmE) gene, complete cds
KY854439 rplK Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L11 (rplK) gene, complete cds
KY854935 rpsC Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S3 (rpsC) gene, complete cds
KY860844 desA3 Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 delta-12 fatty acid desaturase (desA3) gene, complete cds
KY854270 rmpF Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L32 (rmpF) gene, complete cds
KY854470 rplA Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L1 (rplA) gene, complete cds
KY854966 rplB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L2 (rplB) gene, complete cds
KY860879 desC4 Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 delta-9 fatty acid desaturase (desC4) gene, complete cds
KY854271 rmpG Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L33 (rmpG) gene, complete cds
KY854501 rplJ Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L10 (rplJ) gene, complete cds
KY854997 rplW Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L23 (rplW) gene, complete cds
KY860886 des Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 fatty acid desaturase family protein (des) gene, complete cds
KY854272 rpmH Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L34 (rpmH) gene, complete cds
KY854532 rplL Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L7/L12 (rplL) gene, complete cds
KY855028 rplD Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L4 (rplD) gene, complete cds
MG014396 apcA Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 allophycocyanin alpha chain (apcA) gene, complete cds
KY854273 rpmI Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L35 (rpmI) gene, complete cds
KY854563 rpsJ Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S10 (rpsJ) gene, complete cds
KY855059 rplC Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L3 (rplC) gene, complete cds
MG014427 ApcB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 allophycocyanin beta chain (apcB) gene, complete cds
KY854274 rmpJ Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L36 (rmpJ) gene, complete cds
KY854594 rpsG Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S7 (rpsG) gene, complete cds
KY855090 rpsA1 Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S1 (rpsA1) gene, complete cds
MG014458 apcD Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 allophycocyanin alpha-B chain (apcD) gene, complete cds
KY854275 rpsK Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S11 (rpsK) gene, complete cds
KY854625 rpsI Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S9 (rpsI) gene, complete cds
KY855121 rplS Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L19 (rplS) gene, complete cds
MG014489 apcF Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 allophycocyanin beta-18 chain (apcF) gene, complete cds
KY854276 rpsL Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S12 (rpsL) gene, complete cds
KY854656 rplM Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L13 (rplM) gene, complete cds
KY855152 rpsA2 Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S1 (rpsA2) gene, complete cds
MG014518 cpcB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 phycocyanin beta chain (cpcB) and phycocyanin alpha chain (cpcA) genes, complete cds
KY854277 rpsN Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S14 (rpsN) gene, complete cds
KY854687 rpsM Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S13 (rpsM) gene, complete cds
KY855183 rpsD Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S4 (rpsD) gene, complete cds
MG014526 cpeF Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 putative phycoerythrin:phycoerythrobilin lyase (cpeF) gene, complete cds
KY854278 rpsO Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S15 (rpsO) gene, complete cds
KY854718 rpsE Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S5 (rpsE) gene, complete cds
KY855214 rpsP Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S16 (rpsP) gene, complete cds
MG014539 cpeY Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 phycoerythrobilin:Cys-82 alpha-phycoerythrin lyase CpeY subunit (cpeY) gene, complete cds
KY854279 rpsQ Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S17 (rpsQ) gene, complete cds
KY854749 rplF Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L6 (rplF) gene, complete cds
KY855245 rpsR Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S18 (rpsR) gene, complete cds
MG014563 mpeB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 C-phycoerythrin class II beta chain (mpeB) and C-phycoerythrin class II alpha chain (mpeA) genes, complete cds
KY854264 rplQ Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L17 (rplQ) gene, complete cds
KY854280 rpsS Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S19 (rpsS) gene, complete cds
KY854780 rpsH Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S8 (rpsH) gene, complete cds
KY855276 rpsB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S2 (rpsB) gene, complete cds
MG014588 mpeY Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 putative phycobilin:C-phycoerythrin II lyase (mpeY) gene, complete cds
KY854265 rplR Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L18 (rplR) gene, complete cds
KY854281 rpsU Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S21 (rpsU) gene, complete cds
KY854811 rplE Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L5 (rplE) gene, complete cds
KY855307 rpsT Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 30S ribosomal protein S20 (rpsT) gene, complete cds
MG018776 cpeB Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 C-phycoerythrin class I beta subunit (cpeB) and C-phycoerythrin class I alpha subunit (cpeA) genes, complete cds
KY854266 rplT Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L20 (rplT) gene, complete cds
KY854346 rplO Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L15 (rplO) gene, complete cds
KY854842 rplX Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L24 (rplX) gene, complete cds
KY855338 rpmA Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus Synechococcus sp. SYN20 50S ribosomal protein L27 (rpmA) gene, complete cds
CP047959 Genome Synechococcus sp. SYN20 Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae; Synechococcus; unclassified Synechococcus Synechococcus sp. SYN20 chromosome, complete genome

Associated references

Displaying 1 - 6 of 6
Sandaa R.-A., Larsen A.  2006.  Seasonal variations in virus-host populations in norwegian coastal waters: Focusing on the cyanophage community infecting marine synechococcus spp.. Applied and Environmental Microbiology. 72:4610–4618. PDF icon Download pdf (316.97 KB)
Gaignard C., Laroche C., Pierre G., Dubessay P., Delattre C., Gardarin C., Gourvil P., Probert I., Dubuffet A., Michaud P..  2019.  Screening of marine microalgae: Investigation of new exopolysaccharide producers. Algal Research. 44:101711. PDF icon Download pdf (2.59 MB)
Doré H, Farrant GK, Guyet U, Haguait J, Humily F, Ratin M, Pitt FD, Ostrowski M, Six C, Brillet-Guéguen L et al..  2020.  Evolutionary mechanisms of long-term genome diversification associated with niche partitioning in marine picocyanobacteria. Frontiers in Microbiology. 11:1–23. PDF icon Download pdf (13.44 MB)
Grébert T, Doré H, Partensky F, Farrant GK, Boss ES, Picheral M, Guidi L, Pesant S, Scanlan DJ, Wincker P et al..  2018.  Light color acclimation is a key process in the global ocean distribution of Synechococcus cyanobacteria. Proceedings of the National Academy of Sciences. in press:201717069. PDF icon Download pdf (3.72 MB)
Sanfilippo JE, Nguyen AA, Garczarek L, Karty JA, Pokhrel S, Strnat JA, Partensky F, Schluchter WM, Kehoe DM.  2019.  Interplay between differentially expressed enzymes contributes to light color acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences. 116:6457–6462.
Six C, Ratin M, Marie D, Corre E.  2021.  Marine Synechococcus picocyanobacteria: Light utilization across latitudes. Proceedings of the National Academy of Sciences. 118 PDF icon Download pdf (1.31 MB), PDF icon Download pdf (1.15 MB)