RCC716

Bathycoccus_calidus

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ABS compliance

Are users allowed to use this biological resource without applying for formal ABS authorization?
Yes - (D) No information on country of origin, resource sampled pre-NP
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IDENTITY

Bathycoccus_calidus

Domain: 
Eukaryota
Division: 
Chlorophyta
Class: 
Mamiellophyceae
Order: 
Mamiellales
Family: 
Bathycoccaceae
Genus: 
Bathycoccus
Remark: 
Not in WORMS
Strain name: 
IndianOcean_42-6
Strain name synonyms: 
CCMP3404
Authentic culture: 
STATUS
Clonal: 
Axenic: 
Pure: 
Heterotrophic: 
Toxic: 
Symbiotic: 
Transformed: 
MORPHOLOGY
Cell shape: 
coccoid
Length: 
1.00
Cell motility: 
non-motile
ORIGIN
Sampling ocean: 
Indian Ocean
Sampling country: 
International waters
Sampling ecosystem: 
pelagic
Sampling cruise: 
VANC10MV
Sampling station: 
26
Sampling depth (m): 
70
Sampling date: 
Wednesday, June 11, 2003
Isolation by: 
Not F.
Isolation method: 
Filtration< 3µm
CULTURE CONDITIONS
RCC medium: 
L1
RCC temperature: 
22.00
RCC transfer period weeks: 
2.00
RCC light: 
50
Remark: 
This culture seems to be more easy to grow than RCC715. Transcriptomes done by Moore Foundation
RCC Staff >
Details for RCC staff only
Date entered catalog: 
Friday, March 5, 2004
Identification method: 
sequence
Sampling CTD: 
15
Sampling by: 
Not F.
Isolation preculture number: 
42
Isolation medium: 
K/10
Purification date: 
Monday, August 4, 2003
Purification by: 
F.Le Gall
Purification method: 
Flow cytometry sorting

Sequences available for this RCC strain

GenBank Accession Gene name Gene location Genome link Genbank organism Genbank taxonomy Description
Transcriptome Link MMETSP1460
KT809428 ITS rRNA nucleus Bathycoccus prasinos Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus Bathycoccus prasinos strain RCC716 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence
KT860816 18S rRNA nucleus Bathycoccus prasinos Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus Bathycoccus prasinos strain RCC716 isolate ZZ0045083 18S ribosomal RNA gene, partial sequence

Associated references

Displaying 1 - 4 of 4
Vannier T, Leconte J, Seeleuthner Y, Mondy S, Pelletier E, Aury J-M, de Vargas C, Sieracki M, Iudicone D, Vaulot D et al..  2016.  Survey of the green picoalga Bathycoccus genomes in the global ocean. Scientific Reports. 6:37900. PDF icon Download pdf (2.44 MB)
Limardo AJ, Sudek S, Choi CJae, Poirier C, Rii YM, Blum M, Roth R, Goodenough U, Church MJ, Worden AZ.  2017.  Quantitative biogeography of picoprasinophytes establishes ecotype distributions and significant contributions to marine phytoplankton. Environmental Microbiology. PDF icon Download pdf (2.02 MB)
Bachy C, Yung CCM, Needham DM, Gazitúa MConsuelo, Roux S, Limardo AJ, Choi CJae, Jorgens DM, Sullivan MB, Worden AZ.  2021.  Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts. The ISME Journal. :1–19. PDF icon Download pdf (1.73 MB)
Dennu L, Devic M, Rigonato J, Falciatore A, Lozano J-C, Vergé V, Mariac C, Jaillon O, Team TDark Edge, Sabot F et al..  2023.  Biological and genomic resources for the cosmopolitan phytoplankton Bathycoccus: Insights into genetic diversity and major structural variations. PDF icon Download pdf (7.52 MB)