Search references through taxonomy

You may search references here using RCC strains taxonomy. For example, you may search papers involving all Emiliania RCC strains. Note that results depend on references keywords (RCC tags) which will be updated progressively.

Reference
Bendif EMahdi, Probert I, Carmichael M, Romac S, Hagino K, de Vargas C.  2014.  Genetic delineation between and within the widespread coccolithophore morpho-species Emiliania huxleyi and Gephyrocapsa oceanica (Haptophyta). Journal of Phycology. 50:140–148.
Nézan E, Siano R, Boulben S, Six C, Bilien G, Chèze K, Duval A, Le Panse S, Quéré J, Chomérat N.  2014.  Genetic diversity of the harmful family Kareniaceae (Gymnodiniales, Dinophyceae) in France, with the description of ¡i¿Karlodinium gentienii¡/i¿ sp. nov.: A new potentially toxic dinoflagellate. Harmful Algae. 40:75–91.
Chen H, Lin H, Jiang P, Li F, Qin S.  2013.  Genetic transformation of marine cyanobacterium Synechococcus sp. CC9311 (Cyanophyceae) by electroporation. Chinese Journal of Oceanology and Limnology. 31:416–420.
Misumi O, Yoshida Y, Nishida K, Fujiwara T, Sakajiri T, Hirooka S, Nishimura Y, Kuroiwa T.  2008.  Genome analysis and its significance in four unicellular algae, Cyanidioshyzon merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana. Journal of Plant Research. 121:3–17.
Derelle E, Ferraz C, Rombauts S, Rouze P, Worden AZ, Robbens S, Partensky F, Degroeve S, Echeynie S, Cooke R et al..  2006.  Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Proceedings of the National Academy of Sciences of the United States of America. 103:11647–11652.
Leconte, Benites, Vannier, Wincker, Piganeau, Jaillon.  2020.  Genome resolved biogeography of mamiellales. Genes. 11:66.
Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM, Dodson RJ et al..  2006.  Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proceedings of the National Academy of Sciences. 103:13555–13559.
Palenik B, Ren Q, Dupont CL, Myers GS, Heidelberg JF, Badger JH, Madupu R, Nelson WC, Brinkac LM, Dodson RJ et al..  2006.  Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment. Proceedings of the National Academy of Sciences of the United States of America. 103:13555–13559.
B. Belisle S, Paz AAAvila, Carpenter AR, Cormier TC, Lewis AJ, Menin LS, Oliveira DR, Song B, Szeto A, Tchantouridze EI et al..  2020.  Genome sequences of synechococcus sp. Strain MIT S9220 and cocultured cyanophage SynMITS9220M01. Microbiology Resource Announcements. 9:28–30.
Collen J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K et al..  2013.  Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Proceedings of the National Academy of Sciences. 110:5247–5252.
Robbens S, Khadaroo B, Camasses A, Derelle E, Ferraz C, Inze D, Peer Y Van de, Moreau H.  2005.  Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri. Molecular Biology and Evolution. 22:589–597.
Biller SJ, Berube PM, Berta-Thompson JW, Kelly L, Roggensack SE, Awad L, Roache-Johnson KH, Ding H, Giovannoni SJ, Rocap G et al..  2014.  Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus. Scientific Data. 1:1–11.
Guérin N, Ciccarella M, Flamant E, Frémont P, Mangenot S, Istace B, Noel B, Belser C, Bertrand L, Labadie K et al..  2022.  Genomic adaptation of the picoeukaryote Pelagomonas calceolata to iron-poor oceans revealed by a chromosome-scale genome sequence. Communications Biology. 5:1–14.
Cho A, Lax G, Livingston SJ, Masukagami Y, Naumova M, Millar O, Husnik F, Keeling PJ.  2024.  Genomic analyses of Symbiomonas scintillans show no evidence for endosymbiotic bacteria but does reveal the presence of giant viruses. PLOS Genetics. 20:e1011218.
Penot M, Dacks JB, Read B, Dorrell RG.  2022.  Genomic and meta-genomic insights into the functions, diversity and global distribution of haptophyte algae. Applied Phycology. :1–20.
Ruvindy R, Barua A, Bolch CJS, Sarowar C, Savela H, Murray SA.  2023.  Genomic copy number variability at the genus, species and population levels impacts in situ ecological analyses of dinoflagellates and harmful algal blooms. ISME Communications. 3:1–11.
Stuart RK, Brahamsha B, Busby K, Palenik B.  2013.  Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress. The ISME Journal. 7:1139–1149.
Astorga-Eló M, Ramírez-Flandes S, DeLong EF, Ulloa O.  2015.  Genomic potential for nitrogen assimilation in uncultivated members of Prochlorococcus from an anoxic marine zone. The ISME Journal. 9:1264–1267.
Laloui W, Palinska KA, Rippka R, Partensky F, de Marsac NT, Herdman M, Iteman I.  2002.  Genotyping of axenic and non-axenic isolates of the genus Prochlorococcus and the OMF-'Synechococcus' clade by size, sequence analysis or RFLP of the Internal Transcribed Spacer of the ribosomal operon. Microbiology. 148:453–465.
Slapeta J, López-García P, Moreira D.  2006.  Global dispersal and ancient cryptic species in the smallest marine eukaryotes. Molecular Biology and Evolution. 23:23–29.
Demir-Hilton E, Sudek S, Cuvelier ML, Gentemann CL, Zehr JP, Worden AZ.  2011.  Global distribution patterns of distinct clades of the photosynthetic picoeukaryote Ostreococcus. The ISME journal. 5:1095–1107.
Chamnansinp A, Li Y, Lundholm N, Moestrup Ø.  2013.  Global diversity of two widespread, colony-forming diatoms of the marine plankton, Chaetoceros socialis (syn. C. radians ) and Chaetoceros gelidus sp. nov.. Journal of Phycology. 49:1128–1141.
Doré H, Leconte J, Guyet U, Breton S, Farrant GK, Demory D, Ratin M, Hoebeke M, Corre E, Pitt FD et al..  2022.  Global Phylogeography of Marine Synechococcus in Coastal Areas Reveals Strong Community Shifts. mSystems. :e00656–22.
Degraeve-Guilbault C, Bréhélin C, Haslam R, Sayanova O, Marie-Luce G, Jouhet J, Corellou F.  2017.  Glycerolipid characterization and nutrient deprivation-associated changes in the green picoalga ostreococcus tauri. Plant Physiology. 173:2060–2080.
Guillou L, Jacquet S, Chrétiennot-Dinet M.-J., Vaulot D.  2001.  Grazing impact of two small heterotrophic flagellates on Prochlorococcus and Synechococcus. Aquatic Microbial Ecology. 26:201–207.
Worden AZ, Lee J.-H, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV et al..  2009.  Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science. 324:268–272.
Liao S, Huang Y.  2022.  Group 2i Isochrysidales flourishes at exceedingly low growth temperatures (0 to 6 °C). Organic Geochemistry. :104512.
Wang KJiaxi, Huang Y, Majaneva M, Belt ST, Liao S, Novak J, Kartzinel TR, Herbert TD, Richter N, Cabedo-Sanz P.  2021.  Group 2i Isochrysidales produce characteristic alkenones reflecting sea ice distribution. Nature Communications. 12:15.
Schiffrine N, Tremblay J-éric, Babin M.  2020.  Growth and elemental stoichiometry of the ecologically-relevant arctic diatom chaetoceros gelidus: A mix of polar and temperate. Frontiers in Marine Science. 6
Giovagnetti V, Cataldo ML, Conversano F, Brunet C.  2012.  Growth and photophysiological responses of two picoplanktonic ¡i¿Minutocellus species¡/i¿, strains RCC967 and RCC703 (Bacillariophyceae). European Journal of Phycology. 47:408–420.
López-Pacheco IY, Ayala-Moreno VGuadalupe, Mejia-Melara CArlette, Rodríguez-Rodríguez J, Cuellar-Bermudez SP, González-González RBerenice, Coronado-Apodaca KG, Farfan-Cabrera LI, González-Meza GMaría, Iqbal HMN et al..  2023.  Growth Behavior, Biomass Composition and Fatty Acid Methyl Esters (FAMEs) Production Potential of Chlamydomonas reinhardtii, and Chlorella vulgaris Cultures. Marine Drugs. 21:450.
Wolhowe MD, Prahl FG, Probert I, Maldonado M.  2009.  Growth phase dependent hydrogen isotopic fractionation in alkenone-producing haptophytes. Biogeosciences. 6:1681–1694.
Zhang Y, Li Z, Schulz KG, Hu Y, Irwin AJ, Finkel ZV.  2021.  Growth-dependent changes in elemental stoichiometry and macromolecular allocation in the coccolithophore Emiliania huxleyi under different environmental conditions. Limnology and Oceanography. 66:2999–3009.
Schmidt M, Horn S, Ehlers K, Wilhelm C, Schnetter R.  2015.  Guanchochroma wildpretii gen. et spec. nov. (ochrophyta) provides new insights into the diversification and evolution of the algal class synchromophyceae.. PloS one. 10:e0131821.
Ota S, Kudo A, Ishida K.  2011.  Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour.. Phycologia. 50:317–326.
Fernandes T, Cordeiro N.  2020.  Hemiselmis andersenii and chlorella stigmatophora as new sources of High-value compounds: A lipidomic approach. Journal of Phycology. :jpy.13042.
Magalhães K, Santos ALopes dos, Vaulot D, de Oliveira MCabral.  2021.  Hemiselmis aquamarina sp . nov . (Cryptomonadales , Cryptophyceae), a cryptomonad with a novel phycobiliprotein type (Cr-PC 564). Protist. in press
Scanlan DJ, Hess WR, Partensky F, Newman J, Vaulot D.  1996.  High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis. European Journal of Phycology. 31:1–9.
Bottini C, Dapiaggi M, Erba E, Faucher G, Rotiroti N.  2020.  High resolution spatial analyses of trace elements in coccoliths reveal new insights into element incorporation in coccolithophore calcite. Scientific Reports. 10:9825.
Garcia NS, Sexton J, Riggins T, Brown J, Lomas MW, Martiny AC.  2018.  High variability in cellular stoichiometry of carbon, nitrogen, and phosphorus within classes of marine eukaryotic phytoplankton under sufficient nutrient conditions. Frontiers in Microbiology. 9:1–10.
Vázquez V, León P, Gordillo FJL, Jiménez C, Concepción I, Mackenzie K, Bresnan E, Segovia M.  2022.  High-CO2 Levels Rather than Acidification Restrict Emiliania huxleyi Growth and Performance. Microbial Ecology.
Fernandes T, Cordeiro N.  2022.  High-value lipids accumulation by Pavlova pinguis as a response to nitrogen-induced changes. Biomass and Bioenergy. 158:106341.
Klouch KZ, Schmidt S, Andrieux-Loyer F, Le Gac M, Hervio-Heath D, Qui-Minet ZN, Quéré J, Bigeard E, Guillou L, Siano R.  2016.  Historical records from dated sediment cores reveal the multidecadal dynamic of the toxic dinoflagellate Alexandrium minutum in the Bay of Brest (France). FEMS Microbiology Ecology. 92:fiw101.
Monier A, Pagarete A, Allen MJ, Read BA, de Vargas C, Claverie JM, Ogata H.  2009.  Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus. Genome Research. 19:1441–1449.
Monier A, Chambouvet A, Milner DS, Attah V, Terrado R, Lovejoy C, Moreau H, Santoro AE, Derelle E, Richards TA.  2017.  Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton. Proceedings of the National Academy of Sciences. :201708097.
Weiss GM, Roepert A, Middelburg JJ, Schouten S, Damsté JSSinning, van der Meer MTJ.  2019.  Hydrogen isotope fractionation response to salinity and alkalinity in a calcifying strain of Emiliania huxleyi. Organic Geochemistry.
Carrillo JB, Gomez-Casati DF, Martín M, Busi MV.  2018.  Identification and analysis of OsttaDSP, a phosphoglucan phosphatase from Ostreococcus tauri. PLOS ONE. 13:e0191621.
Carrillo JB, Torresi F, Morales LL, Ricordi M, Gomez-Casati DF, Busi MV, Martín M.  2020.  Identification and characterization of ChlreSEX4, a novel glucan phosphatase from Chlamydomonas reinhardtii green alga. Archives of Biochemistry and Biophysics. 680:108235.
Baumeister TUH, Vallet M, Kaftan F, Guillou L, Svatoš A, Pohnert G.  2020.  Identification to species level of live single microalgal cells from plankton samples with matrix-free laser/desorption ionization mass spectrometry. Metabolomics. 16:28.
Waltman PH, Guo J, Reistetter ENahas, Purvine S, Ansong CK, van Baren MJ, Wong C-H, Wei C-L, Smith RD, Callister SJ et al..  2016.  Identifying aspects of the post-transcriptional program governing the proteome of the green alga micromonas pusilla.. PloS one. 11:e0155839.
Fischer R, HA G, Ptacnik R.  2017.  Identity of the limiting nutrient (N vs. P) affects the competitive success of mixotrophs. Marine Ecology Progress Series. 563:51–63.
Parsy A, Guyoneaud R, Lot M-C, Baldoni-Andrey P, Périé F, Sambusiti C.  2022.  Impact of salinities, metals and organic compounds found in saline oil & gas produced water on microalgae and cyanobacteria. Ecotoxicology and Environmental Safety. 234:113351.
Faucher G, Hoffmann L, Bach LT, Bottini C, Erba E, Riebesell U.  2017.  Impact of trace metal concentrations on coccolithophore growth and morphology: laboratory simulations of Cretaceous stress. Biogeosciences. 14:3603–3613.
Fischer R, Giebel H-A, Hillebrand H, Ptacnik R.  2017.  Importance of mixotrophic bacterivory can be predicted by light and loss rates. Oikos. 126:713–722.
Marie D, Le Gall F, Edern R, Gourvil P, Vaulot D.  2017.  Improvement of phytoplankton culture isolation using single cell sorting by flow cytometry. Journal of Phycology. 53:271–282.

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