RCC references

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Yamada K, Katsura H, Noël M-H, Ichinomiya M, Kuwata A, Sato S, Yoshikawa S.  2018.  Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). Journal of Phycology. :0–2.PDF icon Yamada et al_2018_Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f.pdf (1.61 MB)
Yamada K, Katsura H, Noël M-H, Ichinomiya M, Kuwata A, Sato S, Yoshikawa S.  2018.  Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f. inornata (Parmales, Stramenopiles). Journal of Phycology. :0–2.PDF icon Yamada et al_2018_Ontogenetic analysis of siliceous cell wall formation in Triparma laevis f.pdf (1.61 MB)
del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I.  2014.  The others: our biased perspective of eukaryotic genomes. Trends in Ecology & Evolution. 29:252–259.PDF icon del Campo et al_2014_The others.pdf (906.55 KB)
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Ishida K-ichiro, Endo H, Koike S.  2011.  Partenskyella glossopodia (Chlorarachniophyceae) possesses a nucleomorph genome of approximately 1 Mbp. Phycological Research. 59:120–122.
Lepelletier F, Karpov SA, Le Panse S, Bigeard E, Skovgaard A, Jeanthon C, Guillou L.  2014.  Parvilucifera rostrata sp. nov., a novel parasite in the phylum Perkinsozoa that infects the toxic dinoflagellate Alexandrium minutum (Dinophyceae). Protist. 165:31–49.PDF icon Lepelletier et al_2014_Parvilucifera rostrata sp.pdf (17.84 MB)
Kettler G, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J et al..  2007.  Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS genetics. 3:e231.PDF icon Kettler et al_2007_Patterns and implications of gene gain and loss in the evolution of.pdf (664.09 KB)
Vaulot D, Birrien J.-L., Marie D, Casotti R, Veldhuis MJW, Kraay GW, Chrétiennot-Dinet M.-J..  1994.  Phaeocystis spp.: morphology, ploidy, pigment composition and genome size of cultured strains. Journal of Phycology. 30:1022–1035.PDF icon Vaulot et al_1994_Phaeocystis spp.pdf (2.23 MB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Fiore CL, Alexander H, Soule MCKido, Kujawinski EB.  2018.  A phosphate starvation response gene (psr1-like) is present and expressed in Micromonas pusilla and other marine algae. bioRxiv. PDF icon Fiore et al_2018_A phosphate starvation response gene (psr1-like) is present and expressed in.pdf (666.41 KB)
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.PDF icon Sharon et al_2009_Photosystem I gene cassettes are present in marine virus genomes.pdf (779.86 KB)
Shukla A, Biswas A, Blot N, Partensky F, Karty JA, Hammad LA, Garczarek L, Gutu A, Schluchter WM, Kehoe DM.  2013.  Phycoerythrin-specific bilin lyase–isomerase controls blue-green chromatic acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences of the United States of America. 109:20136–20141.PDF icon Shukla et al_2013_Phycoerythrin-specific bilin lyase–isomerase controls blue-green chromatic.pdf (2.05 MB)
Shukla A, Biswas A, Blot N, Partensky F, Karty JA, Hammad LA, Garczarek L, Gutu A, Schluchter WM, Kehoe DM.  2013.  Phycoerythrin-specific bilin lyase–isomerase controls blue-green chromatic acclimation in marine Synechococcus. Proceedings of the National Academy of Sciences of the United States of America. 109:20136–20141.PDF icon Shukla et al_2013_Phycoerythrin-specific bilin lyase–isomerase controls blue-green chromatic.pdf (2.05 MB)
Carrigee LA, Frick JP, Liu X, Karty JA, Trinidad JC, Tom IP, Yang X, Dufour L, Partensky F, Schluchter WM.  2022.  The phycoerythrobilin isomerization activity of MpeV in Synechococcus sp. WH8020 is prevented by the presence of a histidine at position 141 within its phycoerythrin-I β-subunit substrate. Frontiers in Microbiology. 13:1011189.PDF icon Carrigee et al_2022_The phycoerythrobilin isomerization activity of MpeV in Synechococcus sp.pdf (5.76 MB)
Liu F, Gledhill M, Tan Q-G, Zhu K, Zhang Q, Salaün P, Tagliabue A, Zhang Y, Weiss D, Achterberg EP et al..  2022.  Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. The ISME Journal. 16:2329–2336.PDF icon Liu et al_2022_Phycosphere pH of unicellular nano- and micro- phytoplankton cells and.pdf (1.5 MB)
Minge MA, Shalchian-Tabrizi K, Torresen OK, Takishita K, Probert I, Inagaki Y, Klaveness D, Jakobsen KS.  2010.  A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evolutionary Biology. 10:191.PDF icon Minge et al_2010_A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in.pdf (1.21 MB)
Cho A, Tikhonenkov DV, Lax G, Prokina KI, Keeling PJ.  2023.  Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean. Molecular Phylogenetics and Evolution. :107964.PDF icon Cho et al. - 2023 - Phylogenomic position of genetically diverse phago.pdf (2.71 MB)
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.
Klinger CM, Paoli L, Newby RJ, Wang MYu-Wei, Carroll HD, Leblond JD, Howe CJ, Dacks JB, Bowler C, A Cahoon B et al..  2018.  Plastid transcript editing across dinoflagellate lineages shows lineage-specific application but conserved trends. Genome Biology and Evolution. 10:1019–1038.PDF icon Klinger et al_2018_Plastid transcript editing across dinoflagellate lineages shows.pdf (744.63 KB)
Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C et al..  2017.  Population genomics of picophytoplankton unveils novel chromosome hypervariability. Science Advances. 3:e1700239.
Blanc-Mathieu R, Krasovec M, Hebrard M, Yau S, Desgranges E, Martin J, Schackwitz W, Kuo A, Salin G, Donnadieu C et al..  2017.  Population genomics of picophytoplankton unveils novel chromosome hypervariability. Science Advances. 3:e1700239.

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