RCC references

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2011
Karpowicz SJ, Prochnik SE, Grossman AR, Merchant SS.  2011.  The GreenCut2 resource, a phylogenomically derived inventory of proteins specific to the plant lineage. Journal of Biological Chemistry. 286:21427–21439.PDF icon Karpowicz et al_2011_The GreenCut2 resource, a phylogenomically derived inventory of proteins.pdf (1.45 MB)
Ota S, Kudo A, Ishida K.  2011.  Gymnochlora dimorpha sp. nov., a chlorarachniophyte with unique daughter cell behaviour.. Phycologia. 50:317–326.PDF icon Ota et al_2011_Gymnochlora dimorpha sp.pdf (2.82 MB)
Luo C, Tsementzi D, Kyrpides NC, Konstantinidis KT.  2011.  Individual genome assembly from complex community short-read metagenomic datasets. The ISME journal. 6:898–901.PDF icon Luo et al_2011_Individual genome assembly from complex community short-read metagenomic.pdf (16 KB)
Luo C, Tsementzi D, Kyrpides NC, Konstantinidis KT.  2011.  Individual genome assembly from complex community short-read metagenomic datasets. The ISME journal. 6:898–901.PDF icon Luo et al_2011_Individual genome assembly from complex community short-read metagenomic.pdf (16 KB)
Hagino K, Bendif EMahdi, Young J, Kogame K, Takano Y, Probert I, Horiguchi T, de Vargas C, Okada H.  2011.  New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliana huxleyi (prymnesiophyceae) from the cox1b-ATP4 genes. Journal of Phycology. 47:1164–1176.
Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB et al..  2011.  Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United States of America. 108:4352–4357.PDF icon Gobler et al_2011_Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.pdf (931.16 KB)
Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB et al..  2011.  Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United States of America. 108:4352–4357.PDF icon Gobler et al_2011_Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.pdf (931.16 KB)
Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB et al..  2011.  Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics. Proceedings of the National Academy of Sciences of the United States of America. 108:4352–4357.PDF icon Gobler et al_2011_Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.pdf (931.16 KB)
Ishida K-ichiro, Endo H, Koike S.  2011.  Partenskyella glossopodia (Chlorarachniophyceae) possesses a nucleomorph genome of approximately 1 Mbp. Phycological Research. 59:120–122.
Lepere C, Demura M, Kawachi M, Romac S, Probert I, Vaulot D.  2011.  Whole Genome Amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiology Ecology. 76:516–523.PDF icon Lepere et al_2011_Whole Genome Amplification (WGA) of marine photosynthetic eukaryote populations.pdf (522.37 KB)
2010
Gile GH, Stern RF, James ER, Keeling PJ.  2010.  Dna Barcoding of Chlorarachniophytes Using Nucleomorph Its Sequences1. Journal of Phycology. 46:743–750.PDF icon Gile et al_2010_Dna Barcoding of Chlorarachniophytes Using Nucleomorph Its Sequences1.pdf (213.35 KB)
Mohr R, Schliep M, Kurz T, Maldener I, Adams DG, Larkum ADW, Chen M, Hess WR.  2010.  A new chlorophyll d -containing cyanobacterium : evidence for niche adaptation in the genus Acaryochloris. The ISME journal. :1456–1469.PDF icon Mohr et al_2010_A new chlorophyll d -containing cyanobacterium.pdf (2.07 MB)
Minge MA, Shalchian-Tabrizi K, Torresen OK, Takishita K, Probert I, Inagaki Y, Klaveness D, Jakobsen KS.  2010.  A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellate Lepidodinium chlorophorum. BMC Evolutionary Biology. 10:191.PDF icon Minge et al_2010_A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in.pdf (1.21 MB)
2009
Meusnier I, Andersen RA, Stern R, Bertrand C, Kuepper F, Brand J, Friedl T, Blackburn S, Dinh D, Acreman J et al..  2009.  DNA barcoding of protists in culture collections. Third international barcode of life conference.
Meusnier I, Andersen RA, Stern R, Bertrand C, Kuepper F, Brand J, Friedl T, Blackburn S, Dinh D, Acreman J et al..  2009.  DNA barcoding of protists in culture collections. Third international barcode of life conference.
Richier S, Kerros ME, de Vargas C, Haramaty L, Falkowski PG, Gattuso JP.  2009.  Light-dependent transcriptional regulation of genes of biogeochemical interest in the diploid and haploid life cycle stages of Emiliania huxleyi. Applied and Environmental Microbiology. 75:3366–3369.PDF icon Richier et al_2009_Light-dependent transcriptional regulation of genes of biogeochemical interest.pdf (272.41 KB)
Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI et al..  2009.  Photosystem I gene cassettes are present in marine virus genomes. Nature. 461:258–262.PDF icon Sharon et al_2009_Photosystem I gene cassettes are present in marine virus genomes.pdf (779.86 KB)
2008
Misumi O, Yoshida Y, Nishida K, Fujiwara T, Sakajiri T, Hirooka S, Nishimura Y, Kuroiwa T.  2008.  Genome analysis and its significance in four unicellular algae, Cyanidioshyzon merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana. Journal of Plant Research. 121:3–17.
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.PDF icon Bowler et al_2008_The Phaeodactylum genome reveals the evolutionary history of diatom genomes.pdf (436.19 KB)
2007
Kettler G, Martiny AC, Huang K, Zucker J, Coleman ML, Rodrigue S, Chen F, Lapidus A, Ferriera S, Johnson J et al..  2007.  Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS genetics. 3:e231.PDF icon Kettler et al_2007_Patterns and implications of gene gain and loss in the evolution of.pdf (664.09 KB)
Khan H, Parks N, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM.  2007.  Plastid genome sequence of the cryptophyte alga Rhodomonas salina CCMP1319: lateral transfer of putative DNA replication machinery and a test of chromist plastid phylogeny. Molecular Biology and Evolution. 24:1832–1842.

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