Search references through taxonomy

You may search references here using RCC strains taxonomy. For example, you may search papers involving all Emiliania RCC strains. Note that results depend on references keywords (RCC tags) which will be updated progressively.

Reference
Filatov DA, Bendif EMahdi, Archontikis OA, Hagino K, Rickaby REM.  2021.  The mode of speciation during a recent radiation in open-ocean phytoplankton. Current Biology.
Wang T., Chen X., Li J.L., Qin S., Cui Y.L., Xu F..  2021.  The moderating role of population succession in the adaptive responses of Synechococcus assemblages: evidence from light intensity simulation experiment. Photosynthetica. 59:587–599.
del Campo J, Sieracki ME, Molestina R, Keeling P, Massana R, Ruiz-Trillo I.  2014.  The others: our biased perspective of eukaryotic genomes. Trends in Ecology & Evolution. 29:252–259.
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP et al..  2008.  The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456:239–244.
Carrigee LA, Frick JP, Liu X, Karty JA, Trinidad JC, Tom IP, Yang X, Dufour L, Partensky F, Schluchter WM.  2022.  The phycoerythrobilin isomerization activity of MpeV in Synechococcus sp. WH8020 is prevented by the presence of a histidine at position 141 within its phycoerythrin-I β-subunit substrate. Frontiers in Microbiology. 13:1011189.
Stawiarski B, Buitenhuis ET, Le Quéré C.  2016.  The physiological response of picophytoplankton to temperature and its model representation. Fronitiers in Marine Science. 3:1–13.
Aveiro SS, Melo T, Figueiredo A, Domingues P, Pereira H, Maia IB, Silva J, M. Domingues R, Nunes C, Moreira ASP.  2020.  The polar lipidome of cultured emiliania huxleyi: A source of bioactive lipids with relevance for biotechnological applications. Biomolecules. 10:1434.
Guillou L, Bachar D, Audic S, Bass D, Berney C, Bittner L, Boutte C, Burgaud G, de Vargas C, Decelle J et al..  2013.  The protist ribosomal reference database (PR2): a catalog of unicellular eukaryote small SubUnit rRNA sequences with curated taxonomy. Nucleic Acids Research. 41:D597–D604.
Walker CE, Taylor AR, Langer G, Durak GM, Heath S, Probert I, Tyrrell T, Brownlee C, Wheeler GL.  2018.  The requirement for calcification differs between ecologically important coccolithophore species. New Phytologist. in press
Vaulot D, Le Gall F, Marie D, Guillou L, Partensky F.  2004.  The roscoff culture collection (RCC): a collection dedicated to marine picoplankton. Nova Hedwigia. 79:49–70.
Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S et al..  2007.  The tiny eukaryote \textit{Ostreococcus provides genomic insights into the paradox of plankton speciation. Proceedings of the National Academy of Sciences of the United States of America. 104:7705–7710.
Roquis D, Cosseau C, Raffalli KBrener, Romans P, Masanet P, Mitta G, Grunau C, Vidal-Dupiol J.  2021.  The tropical coral Pocillopora acuta displays an unusual chromatin structure and shows histone H3 clipping plasticity upon bleaching.
Yee DP, Samo TJ, Abbriano RM, Shimasaki B, Vernet M, Mayali X, Weber PK, B. Mitchell G, Hildebrand M, Decelle J et al..  2023.  The V-type ATPase enhances photosynthesis in marine phytoplankton and further links phagocytosis to symbiogenesis. Current Biology. :S0960982223006152.
Eyal Z, Krounbi L, Ben Joseph O, Avrahami EM, Pinkas I, Peled-Zehavi H, Gal A.  2022.  The variability in the structural and functional properties of coccolith base plates. Acta Biomaterialia. 148:336–344.
Frada M, Probert I, Allen MJ, Wilson WH, de Vargas C.  2008.  The “Cheshire Cat” escape strategy of the coccolithophore Emiliania huxleyi in response to viral infection. Proceedings of the National Academy of Sciences of the United States of America. 105:15944–15949.
Edullantes B.  2020.  Thermal responses of marine phytoplankton : Implications to their biogeography in the present and future oceans.
Caló G, De Marco MAgustina, Salerno GLidia, Martínez-Noël GMaría Ast.  2022.  TOR signaling in the green picoalga Ostreococcus tauri. Plant Science. 323:111390.
Das S, Souissi A, Ouddane B, Hwang J-S, Souissi S.  2022.  Trace metals exposure in three different coastal compartments show specific morphological and reproductive traits across generations in a sentinel copepod. Science of The Total Environment. :160378.
Turmel M, Santos ALopes dos, Otis C, Sergerie R, Lemieux C.  2019.  Tracing the evolution of the plastome and mitogenome in the chloropicophyceae uncovered convergent tRNA gene losses and a variant plastid genetic code. Genome Biology and Evolution. in press
Bretherton L, Hillhouse J, Kamalanathan M, Finkel ZV, Irwin AJ, Quigg A.  2020.  Trait-dependent variability of the response of marine phytoplankton to oil and dispersant exposure. Marine Pollution Bulletin. 153:110906.
Alonso-Sáez L, Palacio AS, Cabello AM, Robaina-Estévez S, González JM, Garczarek L, López-Urrutia Á.  2023.  Transcriptional Mechanisms of Thermal Acclimation in \textit{Prochlorococcus. mBio. :e03425–22.
Kamakura S, Bilcke G, Sato S.  2024.  Transcriptional responses to salinity-induced changes in cell wall morphology of the euryhaline diatom Pleurosira laevis. Journal of Phycology. n/a
Rokitta SD, de Nooijer LJ, Trimborn S, de Vargas C, Rost B, John U.  2011.  Transcriptome analyses reveal differential gene expression patterns between the life-cycle stages of Emiliania huxleyi (Haptophyta) and reflect specialization to different ecological niches. Journal of Phycology. 47:829–838.
von Dassow P, Ogata H, Probert I, Wincker P, Da Silva C, Audic S, Claverie J-M, de Vargas C.  2009.  Transcriptome analysis of functional differentiation between haploid and diploid cells of Emiliania huxleyi, a globally significant photosynthetic calcifying cell. Genome Biology. 10:R114.
Liu Z, Mesrop LY, Hu SK, Caron DA.  2019.  Transcriptome of thalassicolla nucleata holobiont reveals details of a radiolarian symbiotic relationship. Frontiers in Marine Science. 6:1–11.
Kessenich CR, Ruck EC, Schurko AM, Wickett NJ, Alverson AJ.  2014.  Transcriptomic insights into the life history of bolidophytes , the sister lineage to diatoms. Journal of Phycology. 983:977–983.
Lu Y, Wohlrab S, Groth M, Glöckner G, Guillou L, John U.  2016.  Transcriptomic profiling of Alexandrium fundyense during physical interaction with or exposure to chemical signals from the parasite Amoebophrya.. Molecular ecology. 25:1294–307.
Syhapanha KS, Russo DA, Deng Y, Meyer N, Poulin RX, Pohnert G.  2023.  Transcriptomics‐guided identification of an algicidal protease of the marine bacterium Kordia algicida OT‐1. MicrobiologyOpen. 12:e1387.
Bouget FYves.  2019.  Transient transformation of ostreococcus species (OTTH595, RCC809 and RCC802) and bathycoccus.
Six C, Thomas J-C, Thion L, Lemoine Y, Zal F, Partensky F.  2005.  Two novel phycoerythrin-associated linker proteins in the marine cyanobacterium synechococcus sp. Strain WH8102. Journal of Bacteriology. 187:1685–1694.
van Tol HM, Amin SA, E Armbrust V.  2017.  Ubiquitous marine bacterium inhibits diatom cell division. The ISME Journal. 11:31–42.
Bordiga M., Lupi C., Langer G., Gianoncelli A., Birarda G., Pollastri S., Bonanni V., Bedolla D.E, Vaccari L., Gariani G. et al..  2023.  Unexpected silicon localization in calcium carbonate exoskeleton of cultured and fossil coccolithophores. Scientific Reports. 13:7417.
Thompson AW, Foster RA, Krupke A, Carter BJ, Musat N, Vaulot D, Kuypers MMM, Zehr JP.  2012.  Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga. Science. 337:1546–1550.
Breton S, Jouhet J, Guyet U, Gros V, Pittera J, Demory D, Partensky F, Doré H, Ratin M, Maréchal É et al..  2019.  Unveiling membrane thermoregulation strategies in marine picocyanobacteria. New Phytologist. :nph.16239.
Clerissi C, Grimsley N, Ogata H, Hingamp P, Poulain J, Desdevises Y.  2014.  Unveiling of the diversity of prasinoviruses (phycodnaviridae) in marine samples by using high-throughput sequencing analyses of PCR-Amplified DNA polymerase and major capsid protein genes. Applied and Environmental Microbiology. 80:3150–3160.
Thomas Y, Thiebeauld O.  2020.  USE OF AN AMPHIDINOL FOR ITS FUNGICIDAL AND/OR BACTERICIDAL ACTIVITY ON FUNGI, OOMYCETES AND/OR PATHOGENIC BACTERIA OF PLANTS AND CROP SEEDS.
Tisserand L, Dadaglio L, Intertaglia L, Catala P, Panagiotopoulos C, Obernosterer I, Joux F.  2020.  Use of organic exudates from two polar diatoms by bacterial isolates from the Arctic Ocean. Philosophical transactions. Series A, Mathematical, physical, and engineering sciences. 378:20190356.
Paerl RW, Bouget F-Y, Lozano J-C, Vergé V, Schatt P, Allen EE, Palenik B, Azam F.  2017.  Use of plankton-derived vitamin B1 precursors, especially thiazole-related precursor, by key marine picoeukaryotic phytoplankton. The ISME Journal. 11:753–765.
Merritt KA, Richardson TL.  2024.  Variability in spectral absorption within cryptophyte phycobiliprotein types. Journal of Phycology. n/a
Shimada A, Maruyama T, Miyachi S.  1996.  Vertical distributions and photosynthetic action spectra of two oceanic picophytoplankers, Prochlorococcus marinus and Synechococcus sp. Marine Biology. 127:15–23.
Walde M, Camplong C, de Vargas C, Baudoux A-claire, Simon N.  2023.  Viral infection impacts the 3D subcellular structure of the abundant marine diatom Guinardia delicatula. Frontiers in Marine Science. 9
Yau S, Krasovec M, L. Benites F, Rombauts S, Groussin M, Vancaester E, Aury J-M, Derelle E, Desdevises Y, Escande M-L et al..  2020.  Virus-host coexistence in phytoplankton through the genomic lens. Science Advances. 6:eaay2587.
Bachy C, Yung CCM, Needham DM, Gazitúa MConsuelo, Roux S, Limardo AJ, Choi CJae, Jorgens DM, Sullivan MB, Worden AZ.  2021.  Viruses infecting a warm water picoeukaryote shed light on spatial co-occurrence dynamics of marine viruses and their hosts. The ISME Journal. :1–19.
Castillo YM, Sebastián M, Forn I, Grimsley N, Yau S, Moraru C, Vaqué D.  2020.  Visualization of viral infection dynamics in a unicellular eukaryote and quantification of viral production using virus fluorescence in situ hybridization. Frontiers in Microbiology. 11:1559.
Pierre G, Delattre C, Dubessay P, Jubeau S, Vialleix C, Cadoret J-P, Probert I, Michaud P.  2019.  What is in store for EPS microalgae in the next decade? Molecules. 24:4296.
Lepere C, Demura M, Kawachi M, Romac S, Probert I, Vaulot D.  2011.  Whole Genome Amplification (WGA) of marine photosynthetic eukaryote populations. FEMS Microbiology Ecology. 76:516–523.
Viprey M, Guillou L, Ferréol M, Vaulot D.  2008.  Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach. Environmental Microbiology. 10:1804–1822.
Beuvier T., Probert I., Beaufort L., Suchéras-Marx B., Chushkin Y., Zontone F., Gibaud A..  2019.  X-ray nanotomography of coccolithophores reveals that coccolith mass and segment number correlate with grid size. Nature Communications. 10:751.
Barbeyron T, Thiébaud M, Le Duff N, Martin M, Corre E, Tanguy G, Vandenbol M, Thomas F.  2021.  Zobellia roscoffensis sp. nov. and Zobellia nedashkovskayae sp. nov., two flavobacteria from the epiphytic microbiota of the brown alga Ascophyllum nodosum, and emended description of the genus Zobellia. International Journal of Systematic and Evolutionary Microbiology. 71
Chisholm SW, Frankel SL, Goericke R, Olson RJ, Palenik B, Waterbury JB, West-Johnsrud L, Zettler ER.  1992.  \textit{Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b. Archives of Microbiology. 157:297–300.
Barbeyron T, Le Duff N, Duchaud E, Thomas F.  2023.  \textit{Zobellia alginiliquefaciens sp. nov., a novel member of the flavobacteria isolated from the epibiota of the brown alga Ericaria zosteroides (C. Agardh) Molinari & Guiry 2020. International Journal of Systematic and Evolutionary Microbiology. 73:005924.

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